PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK23108.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 329aa    MW: 36513.2 Da    PI: 9.8206
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK23108.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.6e-11211307284
                 EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHH.HHHHHT--TT-EEEEEE CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltled.esgrsWevkl.iyrkksgryvltkGWke.FvkangLkegDfvvFkl 84 
                  k+ltpsd + ++rl +  + ae++            +++  ++ ++++d  +gr+ ++ + ++ k+s++yv+ +GW++ Fvk  gLk gD + +  
  KFK23108.1 211 TKTLTPSDINGLSRLLIETDSAERYilrymseadqrRIQEGHGVNVRVKDhDTGREHDLVFkRWIKTSRSYVFNGGWRKdFVKRRGLKIGDKIGLIW 307
                 699****************************999998888899*******8889*******666889999*******744***********876664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-16207322IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-17209324IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-18209317No hitNo description
SMARTSM010190.0012210320IPR003340B3 DNA binding domain
PfamPF023621.1E-7211307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MANQESSYLS LGSISLPLND VSVSPTKKNE PKAFYLFGTR IPVPSQDETA KKTSEIENIN  60
YKNSMSLFFV SPMKSDQTSN THCSSDVESS KTLSDDISLA SKVTSSSMPH LTDLSMSPMK  120
KNEPGAVYLF GVRISDPPQE SSSLTSTATS KLGHVCFGSN PKEMSLFSAS SSVKTHCFSK  180
GESSKNPKEG FKNDARKIKK TNQTGDLNII TKTLTPSDIN GLSRLLIETD SAERYILRYM  240
SEADQRRIQE GHGVNVRVKD HDTGREHDLV FKRWIKTSRS YVFNGGWRKD FVKRRGLKIG  300
DKIGLIWDGS MLHFRVLSLA APANQENPN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK23108.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087FZQ60.0A0A087FZQ6_ARAAL; Uncharacterized protein
STRINGA0A087FZQ60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.18e-26B3 family protein