PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK22641.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | NAC | ||||||||
Protein Properties | Length: 196aa MW: 22753.2 Da PI: 8.6822 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133.4 | 1.5e-41 | 20 | 148 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlskkge 98 pG++F+Ptd el+++yLk+k++g + ++ e+i+++d+y++ePwdLp k++ ++++ew+fF++ kky+ +g k+rat+ g Wk t k+++v+s ++ KFK22641.1 20 FPGYKFSPTDVELISYYLKNKMDGLEKSV-EIIPDADVYNIEPWDLPdKSIVKSDTEWFFFCTLGKKYPpRGALKRRATEMGNWKVTSKERDVKS-YSQ 116 69************************999.99***************778888999************956888999******************.999 PP NAM 99 lvglkktLvfy..kgrapkgektdWvmheyrl 128 ++g+k+tLvf+ +gr pkg++t+W++hey + KFK22641.1 117 VIGIKRTLVFHigHGRPPKGKRTEWIIHEYCM 148 ***********8888***************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-45 | 12 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.2 | 19 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-21 | 21 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MEAVGVCKDT TKLVEVPTVF PGYKFSPTDV ELISYYLKNK MDGLEKSVEI IPDADVYNIE 60 PWDLPDKSIV KSDTEWFFFC TLGKKYPPRG ALKRRATEMG NWKVTSKERD VKSYSQVIGI 120 KRTLVFHIGH GRPPKGKRTE WIIHEYCMKE DDDLVLCRLR RNKELYKSEA TRAKVSGREA 180 EWCNEFREHV QLGKDG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-31 | 8 | 164 | 7 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-31 | 8 | 164 | 7 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-31 | 8 | 164 | 7 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-31 | 8 | 164 | 7 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-31 | 8 | 164 | 7 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-31 | 8 | 164 | 7 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK22641.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001302791.1 | 7e-85 | NAC domain-containing protein 89-like | ||||
Refseq | XP_009126534.1 | 7e-85 | PREDICTED: NAC domain-containing protein 89-like | ||||
Swissprot | Q94F58 | 2e-82 | NAC89_ARATH; NAC domain-containing protein 89 | ||||
TrEMBL | A0A087FYD9 | 1e-143 | A0A087FYD9_ARAAL; Uncharacterized protein | ||||
STRING | A0A087FYD9 | 1e-144 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10453 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22290.1 | 8e-85 | NAC domain containing protein 89 |
Publications ? help Back to Top | |||
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