PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK22183.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 386aa    MW: 43996.9 Da    PI: 7.9137
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK22183.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00122042123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C++Cg s s k++ ++Hi +H
  KFK22183.1 20 YLCQYCGISRSKKYLITSHILSH 42
                56*******************96 PP
2zf-C2H218.65e-066688123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ Cg  F+ + +Lk+H+ +H
  KFK22183.1 66 HNCQECGAEFKKPAHLKQHMLSH 88
                67*******************99 PP
3zf-C2H215.55.1e-05110134123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C   dC  s++rk++L+rH+ tH
  KFK22183.1 110 FTCYvdDCAASYRRKDHLNRHLLTH 134
                 789999*****************99 PP
4zf-C2H217.21.4e-05188212123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C+   C k F+ +s+L++H  +H
  KFK22183.1 188 HVCQevGCRKAFRYPSQLQKHRDSH 212
                 789999***************9998 PP
5zf-C2H219.33.1e-06278303123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 +kC+   C+ +Fs +snL++H +  H
  KFK22183.1 278 FKCEveGCSSTFSKPSNLQKHVKAvH 303
                 89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355252042IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-566109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00696688IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.9E-866134No hitNo description
PROSITE profilePS5015711.1576693IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
PROSITE profilePS501579.91110139IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.9E-9110136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.11110134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280112134IPR007087Zinc finger, C2H2
SuperFamilySSF576673.47E-5120166No hitNo description
SMARTSM003550.3139164IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.891139169IPR007087Zinc finger, C2H2
PROSITE patternPS000280141164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-7182212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.19E-6184212No hitNo description
SMARTSM003550.02188212IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743188217IPR007087Zinc finger, C2H2
PROSITE patternPS000280190212IPR007087Zinc finger, C2H2
SMARTSM003554.8220245IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280222245IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.8E-4222243IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035525248269IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.56E-9259316No hitNo description
PROSITE profilePS5015712.715278308IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-8278303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.2E-4278303IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280280303IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-4304330IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.3309335IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280311335IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGEEANIDMD ASMIKDIRKY LCQYCGISRS KKYLITSHIL SHHKMEMEEE RDDEGCEVEE  60
EALGKHNCQE CGAEFKKPAH LKQHMLSHSI EGDLLRSSTM LASITQMRPF TCYVDDCAAS  120
YRRKDHLNRH LLTHKGKLFK CPMENCKSEF SVQGNVGRHV KEMHQNVDSS KDDTGNGDTE  180
GSAGQKPHVC QEVGCRKAFR YPSQLQKHRD SHVKLDSVEA FCSEPGCMKY FTNDECLKAH  240
IRSCHQHVNC EICGSKHLKK NIKRHLRTHD EESTPGVFKC EVEGCSSTFS KPSNLQKHVK  300
AVHEDIRPFI CGFPGCGMRF AYKHVRNNHE NSGSHVYTCG DFVETDGNFT SRPRGGVKRK  360
QVTAEMLIRK RVMPPQFDSA EEHKTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wjq_D9e-12203389284Zinc finger protein 568
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK22183.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415924.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A087FX310.0A0A087FX31_ARAAL; Uncharacterized protein
STRINGA0A087FX310.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.20.0transcription factor IIIA