PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD75818.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family C3H
Protein Properties Length: 303aa    MW: 32808.6 Da    PI: 4.5271
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD75818.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-11120145126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y    C+++ +tG+C yGd CkF H+
  KDD75818.1 120 YQPDVCKDYKETGYCGYGDACKFLHD 145
                 66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.49E-9116150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521119147IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7119146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-13120150IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9120145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.8E-8200254IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.81E-7203253No hitNo description
PROSITE profilePS500898.535210250IPR001841Zinc finger, RING-type
PROSITE patternPS005180228237IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MRRVERESRD GGGGLAFTTR AADKTQLFSF AGSSTLAQNS SDAATRALET ETERRQAGGP  60
RADAGDESLA EGSTYTGLAG YRDWRAGFRQ ESVSTSTPGS GSFGPQRTST NVRMTVRVDY  120
QPDVCKDYKE TGYCGYGDAC KFLHDRGDYK AGYELDRDWA PSLAADRVEQ AADAWDVDAS  180
LDAHAARQRG ERGEGAAAAQ PEDDEVPFAC FSCRLPWREC RDPVTTLCGH YFCEQCALKA  240
EATTGKCGAC GEATRGIFNV AHDVLRRLAR EGSAGEKKEE EDAGGWDAVQ EEEEEGGQET  300
AAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-4144276118325RING finger protein 113A
5z58_M1e-4144276118325RING finger protein 113A
6ff4_t1e-4144276118325RING finger protein 113A
6ff7_t1e-4144276118325RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396996.14e-86Zinc finger CCCH domain-containing protein 51
TrEMBLA0A059LND60.0A0A059LND6_9CHLO; Uncharacterized protein
STRINGA0A087SEF62e-85(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP14831616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.16e-59C3H family protein