PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD74844.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family MYB_related
Protein Properties Length: 178aa    MW: 19607.2 Da    PI: 8.0021
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD74844.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.8e-0797136445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      W +++++ll++a +q G + W ++a+ +g  R++++++ ++ 
       KDD74844.1  97 WGADDELLLLEALEQCGLHAWPRVAQSLG--RSPEEVRAHYE 136
                      99**************************8..*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002914.5E-63378IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.973780IPR000433Zinc finger, ZZ-type
SuperFamilySSF578501.12E-143799No hitNo description
PfamPF005694.1E-83777IPR000433Zinc finger, ZZ-type
CDDcd023354.39E-233785No hitNo description
PROSITE patternPS0135703966IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.55E-789140IPR009057Homeodomain-like
PROSITE profilePS5129312.43192143IPR017884SANT domain
SMARTSM007172.3E-493141IPR001005SANT/Myb domain
PfamPF002492.5E-697136IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAPFLLGTRS KRRKTADAAA AAGGPGRAEK RQGAGLYHCD YCHCDVSQSI RIRCAECPDF  60
DLCVDCFRVG AQVGGHRSDH SYRVVDSLSF PLYEPGWGAD DELLLLEALE QCGLHAWPRV  120
AQSLGRSPEE VRAHYERVYV DVPSFPLPRA TAAMAAVDVR ALIAQRRERR SDGPGPKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E9e-33331531122Transcriptional adapter 2
6cw3_G9e-33331531122Transcriptional adapter 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011402112.11e-494-hydroxyphenylpyruvate dioxygenase
TrEMBLA0A059LLD61e-126A0A059LLD6_9CHLO; Uncharacterized protein (Fragment)
STRINGA0A087STK96e-49(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP187466