PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4U33889.10

Common Name

JCGZ_04962, LOC105633392

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Protein Properties

Length: 148aa MW: 17222.7 Da PI: 9.3661

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4U33889.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.9	7.5e-13	26	116	11	95
HHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 11 lksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 l ++++++p +f++e +++ e ++++t d++g++W+++l++rk+ ++ + W+ Fvk gL++gD v+F+ +++ ++ ++ Jcr4U33889.10 26 L-EHQFIVPSEFLNEPavlNESGEFKQKITSFDQDGKEWTFRLSIRKNEIYskpTFTPASWRPFVKYFGLRDGDGVIFYIEKDdGARKIQIR 116 3.356999***88898844445667899999******885554444558888*******************9887566655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.8E-15	12	110	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.26E-12	15	108	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.36E-13	15	116	No hit	No description
SMART	SM01019	0.0071	17	119	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.5E-10	27	115	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.77	30	119	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MTKLDPEIKS DSIYKLCEKP LTKTDLEHQF IVPSEFLNEP AVLNESGEFK QKITSFDQDG 60 KEWTFRLSIR KNEIYSKPTF TPASWRPFVK YFGLRDGDGV IFYIEKDDGA RKIQIRGLRK 120 INCMLLGNRP WAEVKKVENQ ASTSHYKA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021664346.1	8e-37	uncharacterized protein LOC110653034
TrEMBL	A0A067L2T4	1e-106	A0A067L2T4_JATCU; Uncharacterized protein
STRING	cassava4.1_030218m	2e-35	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15290	3	12

Link Out ? help Back to Top
Entrez Gene	105633392

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]