PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4U32604.10

Common Name

JCGZ_20332, LOC105645550

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Protein Properties

Length: 212aa MW: 24736.7 Da PI: 9.223

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4U32604.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	101.6	4.4e-32	60	164	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++ + W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + Jcr4U32604.10 60 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRTRKAWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGmGDsGKD 155 89*************************966778999***********************************************655888999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +l++ ++r+ Jcr4U32604.10 156 RLYIDWRRR 164 999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-41	52	172	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.83E-29	57	164	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.40E-26	58	152	No hit	No description
PROSITE profile	PS50863	14.156	60	165	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-20	60	165	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.7E-29	60	164	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
HKLTQIYDNP QHHHQMASWL GTKYETAQED TSTGANKLDL MDVNDDEDQS VAVVEKEHMF 60 DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS STNEKGLLLN FEDRTRKAWR FRYSYWNSSQ 120 SYVMTKGWSR FVKDKKLDAG DIVSFQRGMG DSGKDRLYID WRRRPDAPDP TSHNQHRHLS 180 SIPWSPLLMR PPAVPMVPRD HLHLSNPNRT FH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	6e-69	53	165	1	114	B3 domain-containing transcription factor NGA1
5os9_B	6e-69	53	165	1	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012086558.1	1e-156	B3 domain-containing transcription factor NGA1
Swissprot	Q8LMR9	2e-73	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	A0A067JMG9	1e-154	A0A067JMG9_JATCU; Uncharacterized protein
STRING	cassava4.1_022877m	1e-113	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2338	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	1e-72	B3 family protein

Link Out ? help Back to Top
Entrez Gene	105645550

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]