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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4U31143.10 | ||||||||
Common Name | JCGZ_25924 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C3H | ||||||||
Protein Properties | Length: 461aa MW: 51216.5 Da PI: 6.6007 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.9 | 1.3e-06 | 252 | 272 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++ G C++Gd C ++Hg Jcr4U31143.10 252 PCPDHRK-GVCRHGDFCEYSHG 272 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12796 | 2.6E-9 | 54 | 127 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.618 | 58 | 152 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.018 | 58 | 88 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 4.98E-13 | 58 | 148 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.3E-15 | 58 | 140 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 5.91E-15 | 59 | 151 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0086 | 93 | 125 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.087 | 93 | 128 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 0.015 | 247 | 273 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.967 | 252 | 274 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 16 | 282 | 305 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MNTSVGTVET EYSFSMLLEC AADNDVEGFK RSVFDESEVR QVGLWYVHHR VSKKGVLEHR 60 TPLMVAAKYG SADVMKLILS LPEVDVNFSC GSDNSSALHC AASGGSSNAI DVIKLLLLAG 120 ADPSSTDANG HRPVDIIVAY PNFPNLKIAL EKLLKNIGSL CQWELQFSTS SLNSSSPPIS 180 WTSEEGKKDC VDPSFPDTKD DAYANDKFWM FSFKIQPCSR AYFHDWTECP FAHPGENARR 240 RDLRRFHYSC VPCPDHRKGV CRHGDFCEYS HGIFESWLHP AQYRTRLCRD GSSCSRRVCF 300 FAHTNEQLRP VSASTGAAVP SLQAPARDFT AAFNLFSGAL PAVSAVPPFP FTPPMSPSGN 360 DLNLLMAWPQ QNISNLEISG NNLQASRLRT TSNAREIPSE ELNTIQYFEL LQQHLLNDLS 420 YISQPHRNSS TNLSACFKQL NPSNPDRLWS AEVSSPKAHI D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020540778.1 | 0.0 | zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q9LXV4 | 1e-161 | C3H56_ARATH; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A067JH09 | 0.0 | A0A067JH09_JATCU; Uncharacterized protein | ||||
STRING | XP_002513504.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 1e-157 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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