PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4U30897.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 125aa MW: 13281 Da PI: 8.0519 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5e-18 | 52 | 97 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + Jcr4U30897.10 52 KGPWSPEEDAILSRLVSKFGARNWSLIARGIS-GRSGKSCRLRWCNQ 97 79******************************.***********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.235 | 47 | 102 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-15 | 51 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-17 | 52 | 97 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-23 | 53 | 108 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.31E-18 | 53 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.33E-15 | 54 | 96 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MEKEIKDKKA IEIDGVNSGD GGGEDGSGSG DDLLLAVGEG GGSGQTCKDR VKGPWSPEED 60 AILSRLVSKF GARNWSLIAR GISGRSGKSC RLRWCNQLDP AVKRKPFTGL DGFFGVGIPV 120 FMKHD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-17 | 49 | 108 | 4 | 63 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034627 | 0.0 | KM034627.1 Jatropha curcas clone JcMYB006 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087961.1 | 3e-69 | transcription factor MYB1 | ||||
Swissprot | Q42575 | 4e-26 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A067JNW7 | 6e-68 | A0A067JNW7_JATCU; MYB family protein | ||||
STRING | cassava4.1_023052m | 8e-50 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20092 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 6e-32 | myb domain protein 109 |
Publications ? help Back to Top | |||
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