PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WRKY

Protein Properties

Length: 215aa MW: 23205.2 Da PI: 6.6236

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4U29448.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.4	1.1e-31	134	191	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+vkg+++prsYYrCt +C+v+k ver ++dp ++++tYeg+Hnh+ Jcr4U29448.40 134 GDGFRWRKYGQKVVKGNPYPRSYYRCTGLKCNVRKYVERVSDDPGAFITTYEGKHNHD 191 6********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-32	119	193	IPR003657	WRKY domain
SuperFamily	SSF118290	1.03E-28	127	193	IPR003657	WRKY domain
PROSITE profile	PS50811	33.166	128	193	IPR003657	WRKY domain
SMART	SM00774	6.6E-36	133	192	IPR003657	WRKY domain
Pfam	PF03106	6.0E-25	135	191	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MQGLGIVSDG NGQDKTIALW NNHLNERNES SEGRVENQND IGIPVHLTCQ AKAHPSHDAA 60 GAGPINAGAV TSDNSCGLSG ECDDGGKGLE GDDDEPKSKR RKNDNQSNEA GIHREAAQEP 120 RPVVQNSTET EIVGDGFRWR KYGQKVVKGN PYPRSYYRCT GLKCNVRKYV ERVSDDPGAF 180 ITTYEGKHNH DMPLRGTGSA ASETNSQAPA SRSKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-32	124	193	8	77	Probable WRKY transcription factor 4
2lex_A	3e-32	124	193	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC470015	1e-169	KC470015.1 Jatropha curcas WRKY transcription factor 04 (WRKY04) gene, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012082254.1	1e-159	WRKY transcription factor 44
Refseq	XP_012082255.1	1e-159	WRKY transcription factor 44
TrEMBL	M9TMC6	1e-157	M9TMC6_JATCU; WRKY transcription factor 04.1
STRING	cassava4.1_007976m	1e-117	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6790	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37260.2	4e-37	WRKY family protein

Link Out ? help Back to Top
Entrez Gene	105642151

Publications ? help Back to Top
Xiong W, et al. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene, 2013. 524(2): p. 124-32 [PMID:23644253] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]