PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S28278.20
Common NameJCGZ_26399, LOC105648751
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 223aa    MW: 25874.1 Da    PI: 7.9229
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S28278.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.28e-50141391128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrF+Ptdeelv eyLk+kv + +l++ ++i+e++++k++PwdLp      e+e yfFs+++ ky++g+r nrat+sgyWkatg d+++ s+ 
  Jcr4S28278.20  14 LPPGFRFQPTDEELVFEYLKRKVLSWPLPA-SIIPEINVCKFDPWDLPGD---MEQERYFFSNKEAKYPNGNRINRATASGYWKATGVDRQIGSSs 105
                    79****************************.89***************54...46799**********************************9986 PP

            NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++ +g+kktLvfy+g++p++++tdW+mheyrl
  Jcr4S28278.20 106 sRNNIIGMKKTLVFYRGKTPNASRTDWIMHEYRL 139
                    67778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-5710156IPR003441NAC domain
PROSITE profilePS5100556.1114156IPR003441NAC domain
PfamPF023654.4E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEKLNFMREG MIKLPPGFRF QPTDEELVFE YLKRKVLSWP LPASIIPEIN VCKFDPWDLP  60
GDMEQERYFF SNKEAKYPNG NRINRATASG YWKATGVDRQ IGSSSSRNNI IGMKKTLVFY  120
RGKTPNASRT DWIMHEYRLN SFNQLEKWVL CRIFLKKRNS EIIEDCRNGR INNAEPRFYD  180
FMTRDNASFD SVSSSSNCSS ITDEASSSGE DFDGETSSSH NFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-501216115170NO APICAL MERISTEM PROTEIN
1ut4_B7e-501216115170NO APICAL MERISTEM PROTEIN
1ut7_A7e-501216115170NO APICAL MERISTEM PROTEIN
1ut7_B7e-501216115170NO APICAL MERISTEM PROTEIN
3swm_A9e-501216118173NAC domain-containing protein 19
3swm_B9e-501216118173NAC domain-containing protein 19
3swm_C9e-501216118173NAC domain-containing protein 19
3swm_D9e-501216118173NAC domain-containing protein 19
3swp_A9e-501216118173NAC domain-containing protein 19
3swp_B9e-501216118173NAC domain-containing protein 19
3swp_C9e-501216118173NAC domain-containing protein 19
3swp_D9e-501216118173NAC domain-containing protein 19
4dul_A7e-501216115170NAC domain-containing protein 19
4dul_B7e-501216115170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7752881e-140KC775288.1 Jatropha curcas NAC transcription factor 010 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090627.11e-151NAC domain-containing protein 83
SwissprotQ9FY932e-77NAC83_ARATH; NAC domain-containing protein 83
TrEMBLR4NEP61e-150R4NEP6_JATCU; NAC transcription factor 010
STRINGXP_002511122.11e-110(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-78NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  4. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]