PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S27170.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 206aa    MW: 23811.4 Da    PI: 5.5864
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S27170.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.71.3e-4151223127
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                     G+rFhPt++elv +yL+ kv g + e+ + i++v++++ ePw+Lp  +++ ++ wyfF++r+ k+a g+r++r+t+ g+Wk tgkd+++++    
  Jcr4S27170.10   5 IGYRFHPTEDELVYHYLRLKVLGYDDEV-SDIPQVNLLDNEPWELP-LMENADQVWYFFCERNYKHADGQRAKRTTNGGFWKVTGKDQKIKD---- 94 
                    69***********************999.56***************.6778899************************************98.... PP

            NAM  99 lvglkktLvfykgrapkgektdWvmheyr 127
                     v +kk Lv+y+gr+++g++t+W+mhey+
  Jcr4S27170.10  95 -VAIKKRLVYYQGRSSSGVRTNWIMHEYH 122
                    .9**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.5393139IPR003441NAC domain
SuperFamilySSF1019412.62E-424128IPR003441NAC domain
PfamPF023653.6E-246122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDAGIGYRFH PTEDELVYHY LRLKVLGYDD EVSDIPQVNL LDNEPWELPL MENADQVWYF  60
FCERNYKHAD GQRAKRTTNG GFWKVTGKDQ KIKDVAIKKR LVYYQGRSSS GVRTNWIMHE  120
YHPTFNFRIK LIKFLITVKS TITSKRPDDD DDAAPTVDEG QSSTASASGN NATEEDPQLQ  180
AHVASFQGYN ETEYNLNSAM QWNSYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-29612218139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753471e-132KC775347.1 Jatropha curcas NAC transcription factor 069 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538565.11e-134protein NTM1-like 9
SwissprotB5X5708e-38NAC14_ARATH; NAC domain-containing protein 14
SwissprotF4JN353e-38NTL9_ARATH; Protein NTM1-like 9
TrEMBLR4NHS41e-133R4NHS4_JATCU; NAC transcription factor 069
STRINGcassava4.1_028212m1e-87(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-40NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]