PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S22614.10

Common Name

JCGZ_08224, LOC105635352

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 374aa MW: 40590 Da PI: 9.0607

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S22614.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1e-05	168	190	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C++Cg++F+ +++L+ H+++ H Jcr4S22614.10 168 ACSHCGEVFPKSESLELHQKVrH 190 6*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	167	190	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.743	167	195	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.90.228.10	8.4E-10	201	370	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
SuperFamily	SSF56399	4.03E-20	219	370	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MALLTFLPEQ REKGKKPSKC KRKLQKQKQK QKQPSSWDQI KNLLTCKQVE DSSVHDPSKN 60 SNGYSKIGSS CSSICSFRDV VHGNTRVVDR ADNSPESSIV GQETGLLSRK PVNGSSSRSL 120 GSSGRSNSGA TYTSSSRGMQ FRKLSGCYEC HMIVDPSRYP TPRTTICACS HCGEVFPKSE 180 SLELHQKVRH AVSELGPDDS GRNIRTIQRF EDCREAVKTR ALNSTKKNPR CAADGNELLR 240 FHCTTLTCSL GARGSSNLCG SIPACGVCTI IRHGFQGKEC KGVRTTASSG RAHDSLLGCT 300 DGRRAMLVCR VIAGRVKRSA EDAPPPEENA VPAGGSYDSV AGCAGIYSNL EELFVFNPRA 360 ILPCFVVIYN ALEC

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MALLTFLPEQ REKGKKPSKC KRKLQKQKQK QKQPSSWDQI KNLLTCKQVE DSSVHDPSKN  60
SNGYSKIGSS CSSICSFRDV VHGNTRVVDR ADNSPESSIV GQETGLLSRK PVNGSSSRSL  120
GSSGRSNSGA TYTSSSRGMQ FRKLSGCYEC HMIVDPSRYP TPRTTICACS HCGEVFPKSE  180
SLELHQKVRH AVSELGPDDS GRNIRTIQRF EDCREAVKTR ALNSTKKNPR CAADGNELLR  240
FHCTTLTCSL GARGSSNLCG SIPACGVCTI IRHGFQGKEC KGVRTTASSG RAHDSLLGCT  300
DGRRAMLVCR VIAGRVKRSA EDAPPPEENA VPAGGSYDSV AGCAGIYSNL EELFVFNPRA  360
ILPCFVVIYN ALEC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012073810.1	0.0	uncharacterized protein LOC105635352
TrEMBL	A0A067KPI9	0.0	A0A067KPI9_JATCU; Uncharacterized protein
STRING	XP_002510523.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10341	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-135	C2H2-like zinc finger protein

Link Out ? help Back to Top
Entrez Gene	105635352

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]