PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S20061.20
Common NameJCGZ_24432, LOC105646354
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family RAV
Protein Properties Length: 357aa    MW: 40968 Da    PI: 8.2603
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S20061.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-115198154
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                   +++kGV +   +g W A+I+       + +r++lg+f +++eAa a++ a+ kl+
  Jcr4S20061.20 51 PKFKGVVQQQ-NGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAIKLR 98
                   79****9888.8******999......44**********99************98 PP
2B386.32.6e-27178269183
                    EEEE-..-HHHHTT-EE--HHH.HTT........---......--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkke....esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                    f+k+ltpsdv+k++rlv+pkkfa ++        +   e    e+ +l++ d+  + W+++++y+k+s++yv+t+GW++Fvk+++Lke+D+v+F+
  Jcr4S20061.20 178 FQKELTPSDVGKLNRLVIPKKFAIKYfpyisgnvE---EdagiEDLELVFFDRLMKCWKFRYCYWKSSQSYVFTRGWNRFVKEKNLKEKDIVTFY 269
                    99****************************96551...344457789***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-75198IPR001471AP2/ERF domain
CDDcd000185.24E-2451109No hitNo description
PROSITE profilePS5103217.62252107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-1852107IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1652109IPR016177DNA-binding domain
SMARTSM003801.3E-1952113IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.8E-33175270IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-28176270IPR015300DNA-binding pseudobarrel domain
CDDcd100176.66E-26177269No hitNo description
PfamPF023625.5E-25178270IPR003340B3 DNA binding domain
SMARTSM010194.2E-19178289IPR003340B3 DNA binding domain
PROSITE profilePS5086312.097178292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEDDASSSLL SNGKTNIVTF QISDSFDSNY PPFCASKRPR LEHNNNNNNA PKFKGVVQQQ  60
NGHWGAQIYA NHQRIWLGTF KSEKEAAMAY DSAAIKLRSG DSCRNFPWNE RNIQEPNFQI  120
QFSAQVILNM IRDGSYQPNF ADFLKTQSRR QGLAGTSSLE NNSIQTYGDG QFSCIQLFQK  180
ELTPSDVGKL NRLVIPKKFA IKYFPYISGN VEEDAGIEDL ELVFFDRLMK CWKFRYCYWK  240
SSQSYVFTRG WNRFVKEKNL KEKDIVTFYA CIGPNTVQEG QHFSLIDISY SNGQSCVADD  300
GVSHIEEMQK DLELNLGQTI RNKFHKHEEK GENGFRELEL KISSKSKGLR LFGVQIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2917726813100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087592.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6881e-106RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A067JPZ40.0A0A067JPZ4_JATCU; Uncharacterized protein
STRINGcassava4.1_023592m1e-176(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-108RAV family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]