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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S19737.10 | ||||||||
Common Name | JCGZ_06797, LOC105634755 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NAC | ||||||||
Protein Properties | Length: 257aa MW: 29899.8 Da PI: 9.6559 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 130.4 | 1.3e-40 | 5 | 138 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pG+rF Pt+eel+++yL++++e+k+ +++vi+ + iy++ Pw+Lp+ + + ++w+fF++r++++a+g r+nr t++gyWkatg Jcr4S19737.10 5 APGIRFYPTEEELLSFYLHHRLEAKQedliRVMDRVIPVLYIYEFSPWQLPQfsgvYSRRDPEQWFFFIPRQESEARGGRPNRLTTDGYWKATGCP 100 69***********************9777433345699999**********556543333556********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s++++ vg+k+t+vfykgrap+g+kt+W m+ey+ Jcr4S19737.10 101 GYVYSSNNRCVGVKRTMVFYKGRAPRGRKTEWKMNEYK 138 *************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-43 | 3 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.587 | 4 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-20 | 6 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MENFAPGIRF YPTEEELLSF YLHHRLEAKQ EDLIRVMDRV IPVLYIYEFS PWQLPQFSGV 60 YSRRDPEQWF FFIPRQESEA RGGRPNRLTT DGYWKATGCP GYVYSSNNRC VGVKRTMVFY 120 KGRAPRGRKT EWKMNEYKAI DREASSSSTG ASLSLRHEFS LCRVYKKAKC LRSFDRRPVG 180 METRQLMVHG DEVARPSTHP KRKRSSAESS SLGGHGYPSQ ETGQQSNNNI PMAVIHNEPL 240 WDWDQLKDWR DYGGLGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-31 | 3 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-31 | 3 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-31 | 3 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-31 | 3 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-31 | 3 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-31 | 3 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-31 | 3 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-31 | 3 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-31 | 3 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-31 | 3 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-31 | 3 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-31 | 3 | 167 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-31 | 3 | 167 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-31 | 3 | 167 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC775317 | 1e-174 | KC775317.1 Jatropha curcas NAC transcription factor 039 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012073055.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-74 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | R4NHM9 | 0.0 | R4NHM9_JATCU; NAC transcription factor 039 | ||||
STRING | XP_002530539.1 | 1e-114 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-74 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Entrez Gene | 105634755 |
Publications ? help Back to Top | |||
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