PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S18418.10
Common NameJCGZ_05423
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 356aa    MW: 40460.8 Da    PI: 9.0102
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S18418.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.52.9e-07182204123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C+ Cgk F+r  nL+ H+r H
  Jcr4S18418.10 182 HYCQVCGKGFKRDANLRMHMRAH 204
                    68*******************99 PP
2zf-C2H210.60.0018281304123
                    EEETTTT.EEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                    y+C+ C+ k Fs  s+L++H + +
  Jcr4S18418.10 281 YVCKRCNrKQFSVLSDLRTHEKHC 304
                    9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.91E-6180208No hitNo description
SMARTSM003550.0034182204IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653182209IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-6182208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0021183202No hitNo description
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
SMARTSM0035581243276IPR015880Zinc finger, C2H2-like
SMARTSM0035522281303IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEISSHSNSL LYSLSLLKEK VNQVQSLVSI IISPDQTAQQ PESTSLAITR MSTMIQEIIV  60
TASSMVFTCQ QMGTSNPSTN QLHRPAVANA NRVQENELLQ SNFGGSDRGK SYFSSETFDW  120
YGENYNSYNS NRGMVVISNN NNKMENKREN VENNIEEKLS SVMKNYDIIE LDAADLLAKY  180
SHYCQVCGKG FKRDANLRMH MRAHGDEYKT HAALSNPMKN SRSEGDDIDN NDKESRLKLP  240
RKYSCPQEGC RWNKKHVKFQ PLKSMICVKN HYKRSHCPKM YVCKRCNRKQ FSVLSDLRTH  300
EKHCGDVKWQ CSCGTTFSRK DKLMGHVALF IGHSPATTAT SSSTKPATTE MEFKCN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020532575.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ0WT241e-113STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A067L6580.0A0A067L658_JATCU; Uncharacterized protein
STRINGcassava4.1_031762m1e-166(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-106C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]