PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S17589.10 | ||||||||
Common Name | JCGZ_23231, LOC105647433 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bHLH | ||||||||
Protein Properties | Length: 203aa MW: 23080.5 Da PI: 11.7489 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.4 | 3.3e-05 | 130 | 177 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ +rE +R + +++ L +l+P + +K s + Le+A++YI L Jcr4S17589.10 130 RKKEVARENKRLPILEDRLRVLSRLVPGC-----RKTSFTSLLEEATDYIAAL 177 667789**********************9.....8***************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.10.90.10 | 5.3E-4 | 9 | 86 | IPR029034 | Cystine-knot cytokine |
Gene3D | G3DSA:4.10.280.10 | 1.3E-7 | 126 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-10 | 128 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.712 | 128 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MASLISSLES NSDTSQEFKQ RKKRRKLTHE TQNQSQNGET NNRNISKTRW KTQAEQQIYS 60 SKLLEALRRS RRTSSISSRG REIRETADKV LAGAAKGKTR WSRAILAGRL RLRKVKKVRK 120 VKVTGERRLR KKEVARENKR LPILEDRLRV LSRLVPGCRK TSFTSLLEEA TDYIAALEMQ 180 VKAMTTLTEI LAAGGDAQVN SAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 25 | KKRRK |
2 | 108 | 117 | RLRLRKVKKV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012088908.1 | 1e-143 | transcription factor bHLH149 | ||||
TrEMBL | A0A067JKQ5 | 1e-141 | A0A067JKQ5_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_016663m | 6e-96 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1387 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06590.2 | 1e-25 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105647433 |
Publications ? help Back to Top | |||
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