PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S17569.10

Common Name

JCGZ_19186

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

M-type_MADS

Protein Properties

Length: 261aa MW: 30023.8 Da PI: 6.1649

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S17569.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75.3	4.8e-24	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien + r++tf+kR+ gi+KKA+ELS+LCd+e+a+i+fs+ gkl+ y Jcr4S17569.10 9 KKIENPTYRHITFAKRKSGIIKKAYELSTLCDIEIALIVFSPAGKLFLY 57 68*******************************************9866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.3E-30	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.534	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-26	2	81	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-22	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-22	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-22	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-22	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MGRSKIILKK IENPTYRHIT FAKRKSGIIK KAYELSTLCD IEIALIVFSP AGKLFLYEGK 60 KRLEEIIQHY FDLPDNRRQR QFLKSPSSIE TVTEAERQEN TLIETLKHVQ IRKQQLLEEI 120 ENFHPVPEQP FYPMNMNSDG FIMGSSSYNP VDRPLQFDFD IPGYSEFPFF SNQEPNFPEL 180 QPPPTFLDGH GFPVQNNDNN FNACVPYSHQ MGQFPNMNLP STSTINTNEQ GSASNAPVQG 240 QEGDPAKGFY NPSYGNYHFR F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-15	1	57	1	57	MEF2C
5f28_B	2e-15	1	57	1	57	MEF2C
5f28_C	2e-15	1	57	1	57	MEF2C
5f28_D	2e-15	1	57	1	57	MEF2C
6byy_A	2e-15	1	57	1	57	MEF2 CHIMERA
6byy_B	2e-15	1	57	1	57	MEF2 CHIMERA
6byy_C	2e-15	1	57	1	57	MEF2 CHIMERA
6byy_D	2e-15	1	57	1	57	MEF2 CHIMERA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A067LJ84	0.0	A0A067LJ84_JATCU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77950.2	1e-28	AGAMOUS-like 67

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]