PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S17282.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 254aa MW: 28161.9 Da PI: 4.3671 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.5e-14 | 14 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++ ++ + t++++k++w+++l Jcr4S17282.10 14 KGPWTPEEDIILVSYIQEHGPGNWRS----VP-TNTDNDIKNYWNTHL 56 79************************....55.5566********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-20 | 5 | 62 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.01E-14 | 8 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.333 | 9 | 60 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-10 | 13 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-12 | 14 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.87E-11 | 16 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTDNDIKN YWNTHLKKKL 60 KKFQSAALDS IPTTSERSRN VYNLSPISSR NVTNSPSSSS TYASSTENIS RLLQGWMTSS 120 PKTTFYGNNT TTNDGASIII GNSPVGNDNV KGVAVQEMSN GLISHEEFES ILSFENLNNI 180 SAWDKCTCDS ASEEKEAENK KKQKSEINNN PPLSFLEKWL LDESTGNSDQ VLEEEEGEGE 240 GEEEDEAMEL SPIF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034730 | 0.0 | KM034730.1 Jatropha curcas clone JcMYB110 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012070355.2 | 1e-131 | myb-related protein 306 | ||||
Swissprot | B3VTV7 | 8e-55 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | A0A067KXC0 | 1e-129 | A0A067KXC0_JATCU; MYB family protein | ||||
STRING | cassava4.1_031668m | 1e-66 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22263 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 5e-33 | myb domain protein 60 |
Publications ? help Back to Top | |||
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