PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S16451.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 255aa MW: 29445.3 Da PI: 5.0704 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4.2e-09 | 1 | 22 | 24 | 46 |
HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46 W++Ia++++ gRt++++k++w++ Jcr4S16451.20 1 WSKIAAHFP-GRTDNEIKNHWNT 22 *********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.33E-7 | 1 | 32 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.61E-5 | 1 | 22 | No hit | No description |
PROSITE profile | PS51294 | 18.088 | 1 | 28 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-6 | 1 | 22 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-11 | 1 | 28 | IPR009057 | Homeodomain-like |
SuperFamily | SSF49764 | 1.41E-27 | 117 | 245 | IPR008978 | HSP20-like chaperone |
Gene3D | G3DSA:2.60.40.790 | 1.4E-28 | 118 | 248 | IPR008978 | HSP20-like chaperone |
PROSITE profile | PS01031 | 21.175 | 144 | 242 | IPR002068 | Alpha crystallin/Hsp20 domain |
Pfam | PF00011 | 1.9E-21 | 144 | 246 | IPR002068 | Alpha crystallin/Hsp20 domain |
CDD | cd06464 | 2.72E-22 | 144 | 242 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
WSKIAAHFPG RTDNEIKNHW NTRIKKKLKI LGIDPQTHKR IDTEEAETAK EESKVKDYQI 60 ESESLRKEFD AGSVLNSCTD KSESFCSRIE ESVIKEESQQ NWIDNVDSLL SWDGFKLWDR 120 FPTARTVQQM METMERMIGR TPWEIKEGET EYKMRFDMPG MTKEDVKVWV EEKMLVLKAE 180 KVPEKNNVNG AQNGIEEEEE DGGWSAKSYG KYSCRIALPE NIQFEKIKAE VKDGVLYITI 240 PKASTTGKIL GINVQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5nms_A | 8e-33 | 117 | 255 | 1 | 143 | 25.3 kDa heat shock protein, chloroplastic |
5nms_C | 8e-33 | 117 | 255 | 1 | 143 | 25.3 kDa heat shock protein, chloroplastic |
5nms_D | 8e-33 | 117 | 255 | 1 | 143 | 25.3 kDa heat shock protein, chloroplastic |
5nms_G | 8e-33 | 117 | 255 | 1 | 143 | 25.3 kDa heat shock protein, chloroplastic |
5nms_I | 8e-33 | 117 | 255 | 1 | 143 | 25.3 kDa heat shock protein, chloroplastic |
5nms_J | 8e-33 | 117 | 255 | 1 | 143 | 25.3 kDa heat shock protein, chloroplastic |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM017553 | 0.0 | KM017553.1 Jatropha curcas isolate A MYB117 (MYB117) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012085581.1 | 2e-79 | small heat shock protein, chloroplastic | ||||
TrEMBL | A0A067K3C8 | 4e-78 | A0A067K3C8_JATCU; Uncharacterized protein | ||||
STRING | XP_008221979.1 | 4e-67 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66230.1 | 5e-17 | myb domain protein 20 |