PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S16138.10 | ||||||||
Common Name | JCGZ_25535, LOC105646512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C3H | ||||||||
Protein Properties | Length: 295aa MW: 30995.2 Da PI: 9.8234 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 36 | 59 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H Jcr4S16138.10 36 KSKPCTKFFSTAGCPFGESCHFLH 59 7789******************** PP | |||||||
2 | zf-CCCH | 24.1 | 6.3e-08 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k +lC+ + Ck+Gd+C+FaHg+ Jcr4S16138.10 101 KSRLCNKYNSAEGCKFGDKCRFAHGE 126 6799******99************96 PP | |||||||
3 | zf-CCCH | 27.9 | 4.2e-09 | 262 | 286 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f + G C +G +C+FaHg Jcr4S16138.10 262 FKTKLCENFTK-GSCTFGQKCHFAHG 286 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.91 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.709 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-6 | 35 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-4 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-8 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-13 | 96 | 129 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-7 | 98 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.479 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.1E-6 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.013 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.36E-15 | 159 | 239 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 3.3E-16 | 167 | 238 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 9.0E-13 | 167 | 237 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.823 | 168 | 232 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 8.5E-11 | 170 | 234 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.71E-14 | 170 | 232 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-15 | 257 | 292 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-8 | 260 | 291 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.0E-6 | 261 | 287 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.666 | 261 | 288 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-7 | 262 | 286 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MDIRKRGRPE AGFNAGGGFK KYKQEMDSLS TGVGSKSKPC TKFFSTAGCP FGESCHFLHY 60 VPGGYNAVAQ MMNLAPAVTP VSRNIAAPPA VSNGSTQPLV KSRLCNKYNS AEGCKFGDKC 120 RFAHGEWELG KAVAPSHDDP RTIGTIPGRM GGRMEPTPPG PAANFGASAT AKIAVEASLA 180 GAIIGKGGVN SKQICRQTGA KLSIREHETD PNLRNIEFEG SFEQIRQASS MISELIASVS 240 LANSSAKSMG APGGHAHPGS NFKTKLCENF TKGSCTFGQK CHFAHGAAEL RKSGV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087760.1 | 0.0 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 1e-107 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A067JYK9 | 0.0 | A0A067JYK9_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_013023m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-98 | C3H family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105646512 |
Publications ? help Back to Top | |||
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