PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Jcr4S15677.20

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 600aa MW: 65474.1 Da PI: 8.1583

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S15677.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.8e-39	100	159	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Jcr4S15677.20 100 PDKILPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 159 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	92	157	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-31	102	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	104	158	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	106	142	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence Send to blast
MNGADMPISK DPAIKLFGRK IPVPDTQIPS KNSCSGITKG ENDTIHEDNS RELDKSTASG 60 QSQEDKRTPM QVNEPQKTSK SKEDQVETNS VDQEKIFKKP DKILPCPRCN SLDTKFCYFN 120 NYNVNQPRHF CKNCQRYWTA GGTMRNVPIG AGRRKNKHLA SQYRQILVSS EGVPISRMEN 180 SDSGSQQLIS SVESATTLKP STTGNGMVLK FGPEAPLCES METVLNLGDQ KRYAEMSSVK 240 CLDNVEEPSS CGSSMTASSS RGNELSETVA QKEQVGLVGS STDLNVAHPV HCYPVPPWVL 300 PWNPGWNNAT STTAAQSSAG QPCTPNSNTS NQVQWCPTPI LAVPGFCPPS IPLHFVPASY 360 WGCMPVWTAG KGNLSLSGSK GCSSPSSSAN PSCCSGNGSP NLGKHSRDSD LMDEDKAEKC 420 ILVPKTLRID DPNEALKSPL WATLGLSLDQ KNHVSKGTVF KTCEAKAQGK GHGPDANHIL 480 EANPAALSRS HTHLFCLERM LALAVFREVE LYAKFRLTEV SVHTHASLPL GVDGKIRGSS 540 TECYFNSKYL AELMLEMAAI RIESRVKKQT WHFLLQFSYI KCSVNHVLPP GKVLAHFWGS

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence Send to blast

MNGADMPISK DPAIKLFGRK IPVPDTQIPS KNSCSGITKG ENDTIHEDNS RELDKSTASG  60
QSQEDKRTPM QVNEPQKTSK SKEDQVETNS VDQEKIFKKP DKILPCPRCN SLDTKFCYFN  120
NYNVNQPRHF CKNCQRYWTA GGTMRNVPIG AGRRKNKHLA SQYRQILVSS EGVPISRMEN  180
SDSGSQQLIS SVESATTLKP STTGNGMVLK FGPEAPLCES METVLNLGDQ KRYAEMSSVK  240
CLDNVEEPSS CGSSMTASSS RGNELSETVA QKEQVGLVGS STDLNVAHPV HCYPVPPWVL  300
PWNPGWNNAT STTAAQSSAG QPCTPNSNTS NQVQWCPTPI LAVPGFCPPS IPLHFVPASY  360
WGCMPVWTAG KGNLSLSGSK GCSSPSSSAN PSCCSGNGSP NLGKHSRDSD LMDEDKAEKC  420
ILVPKTLRID DPNEALKSPL WATLGLSLDQ KNHVSKGTVF KTCEAKAQGK GHGPDANHIL  480
EANPAALSRS HTHLFCLERM LALAVFREVE LYAKFRLTEV SVHTHASLPL GVDGKIRGSS  540
TECYFNSKYL AELMLEMAAI RIESRVKKQT WHFLLQFSYI KCSVNHVLPP GKVLAHFWGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012070363.1	0.0	cyclic dof factor 3
TrEMBL	A0A067KTT6	0.0	A0A067KTT6_JATCU; Uncharacterized protein
STRING	cassava4.1_030713m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-64	cycling DOF factor 2