PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S15066.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 423aa    MW: 47785.2 Da    PI: 8.2499
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S15066.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.4e-12287312126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    y   +C+++ +tG+C yGd+CkF+H+
  Jcr4S15066.10 287 YQPDICKDYKETGYCGYGDSCKFMHD 312
                    66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-9285318IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7286313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878286314IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-10287312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-13287317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.1E-12348404IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.39E-12362406No hitNo description
PfamPF139204.4E-8362403No hitNo description
SMARTSM001849.4E-4363400IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.217363401IPR001841Zinc finger, RING-type
CDDcd001622.03E-7363404No hitNo description
PROSITE patternPS005180378387IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
VLKMITGLGL GNLFLVGTAL PPSLVSLTTE LSPIRRYCLS SSLLLLSILA RQXTVDSDSE  60
RVKLVHCSVG LPVFTLMRQV GVIKEYFSTI THIVLLIIFL PHLKMADSGE SQQPAPVCNF  120
FKKPLKNKNI RKRTIDEDED SESFLLHNQK KAPKSDNNKL YFSSKPSKKS KATEANVESD  180
RPIFQFESSK EIQVQHDSKA TATLETETEF SKDARAIRER ALKQAEEALK GKQPASGNEK  240
LYKGIHGYTD HKAGFRREQT ISSEKAGGSH GPLRASAHIR VSARFDYQPD ICKDYKETGY  300
CGYGDSCKFM HDRGDYKPGW QLEKEWEEAN KIRKRNLALG EDEDGVDESD DNEDDDDSLP  360
FACFICRKPF VDPVVTKCKH YFCEHCALKH HVKNKKCFVC NQPTLGIFNT AHEIRKKMAE  420
EGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M8e-6311741814317RING finger protein 113A
5z58_M8e-6311741814317RING finger protein 113A
6ff4_t8e-6311741814317RING finger protein 113A
6ff7_t8e-6311741814317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065710.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_012065716.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_020532881.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-169C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A067LPE40.0A0A067LPE4_JATCU; Uncharacterized protein
STRINGcassava4.1_027613m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-171C3H family protein