PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S13985.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 98aa    MW: 10828.2 Da    PI: 10.4015
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S13985.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-093581347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +W++ +d  l++a k ++++   +W++Ia++++ g++   c+ r  k+
    Jcr4S13985.10 35 PWSAGDDIALLNALKAFPKDvamRWEKIAAEVP-GKSMAACRKRVAKL 81
                     8********************************.********997766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-62679IPR009057Homeodomain-like
PROSITE profilePS512949.3222886IPR017930Myb domain
SMARTSM007177.3E-63284IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-103381IPR009057Homeodomain-like
CDDcd001671.05E-73582No hitNo description
PfamPF002497.0E-83581IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MGSIKKPLET KVQAKIGGKE SVENKKDNED IGGVPWSAGD DIALLNALKA FPKDVAMRWE  60
KIAAEVPGKS MAACRKRVAK LKRDFPXXXX XXXXXXIF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083119.11e-34dnaJ homolog subfamily C member 2
SwissprotQ9ASQ22e-19MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A067LHU62e-33A0A067LHU6_JATCU; Uncharacterized protein
STRINGcassava4.1_032822m5e-27(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106861418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.19e-22MYB_related family protein