PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WRKY

Protein Properties

Length: 293aa MW: 33182.7 Da PI: 5.2028

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S13195.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.1	1.6e-27	104	163	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++ g++fpr+Y+rC ++ gC + k+v+rs++dp+++e+tY+g+H++ Jcr4S13195.40 104 DDGYSWRKYGQKDILGANFPRGYFRCIHRhsqGCLAIKQVQRSDQDPSIFEVTYRGRHTC 163 8***********************9988889***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-27	91	164	IPR003657	WRKY domain
PROSITE profile	PS50811	22.791	98	161	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-24	100	163	IPR003657	WRKY domain
SMART	SM00774	2.9E-39	103	165	IPR003657	WRKY domain
Pfam	PF03106	5.0E-26	104	163	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0048527	Biological Process	lateral root development
GO:0005730	Cellular Component	nucleolus
GO:0000987	Molecular Function	core promoter proximal region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MDLEQKNLIN ELSQGKELAE QLRNHLNPSS SLETRLFLVD KLLSSYEKAL CLLNWVELSH 60 SYPNSTPTTD VSLQPSKKKR KTQIRCTEEV KVCSGTGAQA GPPDDGYSWR KYGQKDILGA 120 NFPRGYFRCI HRHSQGCLAI KQVQRSDQDP SIFEVTYRGR HTCVQASHFT SVNENSIQNK 180 DHHHQQQIAK EVKTQDLEIK KESFPSLSFL DELNESDESN NFAASLSPTS DQSNYFSDSY 240 GISLNVRTPD SNLIDIISTS NSVANSPIGD LDFSNFDFEI EPNFQFDNLE FFA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	7e-19	104	163	9	68	OsWRKY45
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00112	ampDAP	Transfer from AT2G46400	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT935498	0.0	KT935498.1 Jatropha curcas isolate IC565735 WRKY transcription factor (WRKY2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012083242.1	0.0	probable WRKY transcription factor 46
TrEMBL	S5CFV8	0.0	S5CFV8_JATCU; WRKY transcription factor
STRING	POPTR_0014s09190.1	7e-99	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF493	34	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46400.1	2e-45	WRKY DNA-binding protein 46

Link Out ? help Back to Top
Entrez Gene	105642873

Publications ? help Back to Top
Xiong W, et al. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene, 2013. 524(2): p. 124-32 [PMID:23644253] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]