PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S12990.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 157aa MW: 17106.3 Da PI: 7.611 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.4 | 3.9e-14 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l+++v+++G+g Wk I + + R+ ++k++w+++ Jcr4S12990.10 5 KQKWTAEEEEALLNGVAKHGPGKWKNILKDPDfapflTQRSNIDLKDKWRNL 56 79***********************************99***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.067 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-17 | 2 | 63 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-16 | 4 | 57 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-7 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-10 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.17E-21 | 6 | 56 | No hit | No description |
SuperFamily | SSF46785 | 2.94E-5 | 109 | 147 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.8E-4 | 112 | 146 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MGNQKQKWTA EEEEALLNGV AKHGPGKWKN ILKDPDFAPF LTQRSNIDLK DKWRNLSVSN 60 ATQGSKDKSR LPKVKTLALT LPSSNAQNFA HADTSADVLM DDPSSNAVDG KNAPRYNAMI 120 FEALSAIKDT NGCDIGAIVH FIELKGELIP GSDVRTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012068940.1 | 1e-103 | telomere repeat-binding factor 4 | ||||
Swissprot | F4I7L1 | 1e-51 | TRB4_ARATH; Telomere repeat-binding factor 4 | ||||
TrEMBL | A0A067KX39 | 1e-102 | A0A067KX39_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_023473m | 6e-84 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3228 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 9e-55 | MYB_related family protein |
Publications ? help Back to Top | |||
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