PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S12858.20
Common NameJCGZ_10278
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 266aa    MW: 30435.6 Da    PI: 9.8696
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S12858.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-17215261148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ed llv++vk +G + W+ Ia+ +  gR +kqc++rw+++l
    Jcr4S12858.20 215 KGQWTPQEDRLLVQLVKHFGIKKWSHIAKLLD-GRVGKQCRERWHNHL 261
                      799*****************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.364210265IPR017930Myb domain
SuperFamilySSF466896.17E-18210265IPR009057Homeodomain-like
SMARTSM007177.0E-15214263IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-23215264IPR009057Homeodomain-like
PfamPF002492.4E-15215261IPR001005SANT/Myb domain
CDDcd001671.88E-15218261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MELKRKLTEE FPYLSSLLSD YPLKQEVIAN GYPHEKGMFQ NLDYLINGDG SIFNNSTNHN  60
HFIGLEGSSK NPFFGISSST SFDIDPLIKT SLLHNGIDPL IETSLLENGS NHSLFSATTN  120
INDLIRAFVF AADYKGGDYN NRLLHGFQLP KIGANRQNHI YHQKMSPNMV LDHDQVSCVI  180
ADNHGLSKNF DHRKDKKPHQ VKKVGKPQKK SHIIKGQWTP QEDRLLVQLV KHFGIKKWSH  240
IAKLLDGRVG KQCRERWHNH LRPDIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-17213266558B-MYB
1h88_C3e-1719926646109MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-1719926646109MYB PROTO-ONCOGENE PROTEIN
1mbg_A9e-18213264152MYB PROTO-ONCOGENE PROTEIN
1mbh_A9e-18213264152C-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346380.0KM034638.1 Jatropha curcas clone JcMYB018 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534745.10.0transcription factor MYB118-like
TrEMBLA0A067LGF90.0A0A067LGF9_JATCU; MYB family protein
STRINGcassava4.1_028573m4e-59(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.12e-31myb domain protein 118
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]