PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S12776.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | TCP | ||||||||
Protein Properties | Length: 230aa MW: 25302.5 Da PI: 10.3739 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 81.2 | 2.7e-25 | 53 | 155 | 4 | 105 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......kaaks 93 k r++++h kv+gRd RvR++a+caar+F+L++eLG+ ++++tieWLl p+ t++ s c +++ + +a+nss + + Jcr4S12776.10 53 NKPRSKDRHKKVEGRDTRVRIPADCAARIFQLTRELGHRTNGQTIEWLLDHVPPSHFPSRATPAVSVATC-DDNLRITAKNSSLHdvpstnA---- 143 699****************************************************999888855555455.333333333333332221110.... PP TCP 94 aakskksqksaa 105 + k++k+++ ++ Jcr4S12776.10 144 SLKQSKPKNIES 155 112222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 19.638 | 57 | 111 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.7E-20 | 57 | 144 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVSQAISIGP PQIFTDFPKT QQLLPQTSTT TTATTPATGT ITTKTQELLF NLNKPRSKDR 60 HKKVEGRDTR VRIPADCAAR IFQLTRELGH RTNGQTIEWL LDHVPPSHFP SRATPAVSVA 120 TCDDNLRITA KNSSLHDVPS TNASLKQSKP KNIESSNSSG NASGGIFQYS NFLDSSLLPT 180 PAPPTRTPRM GDQERNRKEL RGESEFLPGK DGNLPTISFT SLLMQLQREP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012064755.2 | 1e-168 | transcription factor TCP11-like isoform X2 | ||||
Refseq | XP_012064756.2 | 1e-168 | transcription factor TCP11-like isoform X1 | ||||
TrEMBL | A0A2C9W033 | 7e-60 | A0A2C9W033_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_022504m | 1e-60 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22597 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-22 | TCP family protein |