PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S11969.10 | ||||||||
Common Name | JCGZ_01394 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C2H2 | ||||||||
Protein Properties | Length: 229aa MW: 26127.2 Da PI: 8.373 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00012 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Jcr4S11969.10 56 YSCSFCKREFRSAQALGGHMNVH 78 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.7E-6 | 53 | 83 | No hit | No description |
PROSITE profile | PS50157 | 11.24 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.006 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.6E-6 | 56 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEQTQYLMWM KRRSQFLKSK FQVWQNSVNE FSWEEKAFAE DASGSLGGCI WPPRCYSCSF 60 CKREFRSAQA LGGHMNVHRR DRARLKQNHE NFQFHQTQTQ NYNNLILNST SSNIVTSPSS 120 SSRISALSTQ ENINDTKPVK NPREEDSRSL SDHDGFVEAE LFKGFNSLIG SNGDNSCKRP 180 KTAISTVSFL IKPCSSDRYS LQPEVIEAKS VSMEDIDLEL RLGEPPKVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 9e-13 | 51 | 78 | 2 | 29 | superman protein |
2l1o_A | 9e-13 | 51 | 78 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012091230.1 | 1e-172 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A067LKM8 | 1e-163 | A0A067LKM8_JATCU; Uncharacterized protein | ||||
STRING | XP_002524213.1 | 4e-93 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 1e-27 | zinc-finger protein 10 |
Publications ? help Back to Top | |||
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