PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11965.10
Common NameJCGZ_19633, LOC105643823
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 734aa    MW: 81179.4 Da    PI: 6.1889
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11965.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.6e-0684961426
                   --TTTTT-SS-SS CS
        zf-CCCH 14 tCkyGdrCkFaHg 26
                    C+yGd+C+F+H+
  Jcr4S11965.10 84 SCRYGDKCRFSHD 96
                   6***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.3057298IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.465111136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.705.3E-73379621IPR013785Aldolase-type TIM barrel
CDDcd028011.31E-90382617No hitNo description
SuperFamilySSF513953.42E-64382695No hitNo description
PfamPF012077.8E-51385620IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360466484IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002943Biological ProcesstRNA dihydrouridine synthesis
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MAESTPEELV AKAIAPVKKE FLRPPPSRTN QNETAASDAD ADANAKWTVV SKEKKSSRQM  60
KRERREKSVQ HLCPEIAKSQ DVNSCRYGDK CRFSHDLEAF KAQKPPDLEG KCPFMDGDEP  120
CPYGLACRFY GTHEDSVAVA GNGESVQKKG FEINGLKKDV QKLLWKNKMR FPKADAKLKC  180
LGLMGPGNSR VKRRDDEGAD QTLANGSHVT AENGCEVVND LSDKSKCSSE MPIEDNAADG  240
MTSDETRPLK KKKSVEEKCC HSGEANGCLG FXLSVPGKHA ENSSEPEVEQ CTSEVPIEDN  300
AANGITTDET GPLKQTKSVE EKCCTGKEAN GCLGFXLSVL EKGGGNSSIP ELEVVADGAF  360
TETDASLKTH PREKKLFDFR GKLYLAPLTT VGNLPFRRVC KVLGADVTCG EMAMCTNLLQ  420
GQASEWALLR RHSSEDLFGV QICGAYPDTV ARTVELIDKE CMVDFIDINM GCPIDIVVNK  480
GAGSSLLTKP MRMKNVIEAA SGTVDRPITV KVRTGFFEGK NRIDSLIADI GNWGANAVTV  540
HGRTRQQRYS KLADWDYIYQ CARKAPESLQ VLGNGDIFSY TDWNNHKSDC PDLSSSMIAR  600
GALIKPWIFT EIKEQRHWDI TSGERLDILK DYVHFGLEHW GSDAKGVETT RNFLLEWLSY  660
TCRYIPVGLL DVIPQRINWR PPSYFGRDEL ETLMASDSAA DWIRISEMLL GKVPDGFTFA  720
PKHKSNAYDR AENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A7e-2837762625266tRNA-dihydrouridine synthase B
6ei9_B7e-2837762625266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3992500.0KM399250.1 Manihot esculenta FMN-linked oxidoreductases superfamily protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084424.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A067JXU20.0A0A067JXU2_JATCU; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGXP_002513011.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108891212
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]