PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11640.10
Common NameGRAS24, JCGZ_25436, LOC105646401
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 416aa    MW: 46954.9 Da    PI: 6.3772
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11640.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS62.49.1e-2046103158
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs 58 
                    l++lLl+cA++v+sg+le+a+ +L ++s+las dgd+mqR+aayfteALa+r+ +s++
  Jcr4S11640.10  46 LIHLLLTCANHVASGNLENAEIALGQISHLASADGDTMQRIAAYFTEALAHRIIKSWP 103
                    689****************************************************997 PP
2GRAS329.85.1e-10110441393374
           GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                    ++++++NqaI ea+ ge++vH+iD+++ +++QW+aL+q L++Rpegpp+lRiTg+++    +ke l ++++rL + Ae+l++pf+fn+ ++++le+
  Jcr4S11640.10 104 VAFVLTNQAIIEAMVGEKMVHVIDLNAAYPTQWLALFQCLSARPEGPPHLRITGIHQ----QKEVLDQMAHRLIEEAERLDIPFQFNP-IVSKLEN 194
                    57899****************************************************....9**************************.7999*** PP

           GRAS 189 leleeL..rvkpgEalaVnlvlqlhrll.................................desvsleserdevLklvkslsPkvvvvveqeadhn 249
                    l++e+L  +++++  +  + +  lh                                    ++++s+  + d +L++++slsPk++vv+eq+++hn
  Jcr4S11640.10 195 LDVEKLqdELRKRSPVTLKNSNGLHLQRvsqmnqntlgellekdmvngyspsldstlssplSSTAST--KMDYFLNTLRSLSPKLMVVMEQDSNHN 288
                    ******664555555555544444433345888888*******************997764444443..469************************ PP

           GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                    +++++er+leal+ y+alfd+le++++r+s er kvE++++g+ei+n++acegaer+erhe+l+kW +rl+ aGF++vpls++ + qa++ll+ ++
  Jcr4S11640.10 289 GSTLMERLLEALYSYAALFDCLESNVSRTSMERLKVEKMFFGEEIKNIIACEGAERKERHEKLAKWIQRLDLAGFGNVPLSYHGMLQARRLLQGYG 384
                    ************************************************************************************************ PP

           GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     dgy++ ee+g++v++W+drpL+svSaW+
  Jcr4S11640.10 385 CDGYKIMEENGCAVICWQDRPLFSVSAWK 413
                    ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.64420393IPR005202Transcription factor GRAS
PfamPF035143.2E-1746103IPR005202Transcription factor GRAS
PfamPF035141.8E-98104413IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MFQDDGSSSV TSSPLQFFSM MSLSPSIGSP YSWFRELKSE ERGLYLIHLL LTCANHVASG  60
NLENAEIALG QISHLASADG DTMQRIAAYF TEALAHRIIK SWPVAFVLTN QAIIEAMVGE  120
KMVHVIDLNA AYPTQWLALF QCLSARPEGP PHLRITGIHQ QKEVLDQMAH RLIEEAERLD  180
IPFQFNPIVS KLENLDVEKL QDELRKRSPV TLKNSNGLHL QRVSQMNQNT LGELLEKDMV  240
NGYSPSLDST LSSPLSSTAS TKMDYFLNTL RSLSPKLMVV MEQDSNHNGS TLMERLLEAL  300
YSYAALFDCL ESNVSRTSME RLKVEKMFFG EEIKNIIACE GAERKERHEK LAKWIQRLDL  360
AGFGNVPLSY HGMLQARRLL QGYGCDGYKI MEENGCAVIC WQDRPLFSVS AWKCRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-57304152380Protein SCARECROW
5b3h_D1e-57304152380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052480.0KM405248.1 Jatropha curcas GRAS24 protein (GRAS24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087647.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A067JLM70.0A0A067JLM7_JATCU; GRAS24 protein
STRINGcassava4.1_006968m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]