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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S11107.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 135aa MW: 15650.8 Da PI: 10.0307 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.6 | 2.9e-08 | 1 | 24 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W++Ia +++ gRt++++k++w++++ Jcr4S11107.10 1 WSLIAGRLP-GRTANDVKNFWNTHM 24 *********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 5.52E-5 | 1 | 24 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-11 | 1 | 39 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-7 | 1 | 38 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.307 | 1 | 28 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.1E-6 | 1 | 23 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
WSLIAGRLPG RTANDVKNFW NTHMRKKLKP SNPYCEEDNE KGKTVKIIKP RPCKISKIIS 60 LFTATAKNKD HHQNENGSNS EKVPPHSLKG RAVVTNENDW WSDFSSDKEI WNLFFSKEQE 120 VITFDLKVKF VFTTD |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034695 | 1e-89 | KM034695.1 Jatropha curcas clone JcMYB075 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012080578.2 | 2e-59 | transcription factor MYB114 isoform X2 | ||||
TrEMBL | A0A067K8U1 | 1e-50 | A0A067K8U1_JATCU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66380.1 | 6e-13 | myb domain protein 114 |