PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S11083.10 | ||||||||
Common Name | JCGZ_10020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 26154.6 Da PI: 10.1618 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.1 | 1.7e-18 | 127 | 207 | 4 | 87 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 vl+++++ ++++l++p kfa+++ + ++k ++l+ ++g++W v l +++ gr +l+kGWk F+++n L+ gD+++F+l+++ Jcr4S11083.10 127 VLLRPYNCRNSILYVPSKFAKRYLSR--GPKNIKLQVSDGKEWAVCLL-QQGYGRSLLGKGWKIFCRENTLEGGDVCLFELINN 207 67789999***************544..6778***************5.55556779***********************9974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-11 | 14 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-12 | 15 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.48E-6 | 20 | 81 | No hit | No description |
PROSITE profile | PS50863 | 7.556 | 21 | 84 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3 | 22 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-26 | 117 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-24 | 118 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.11E-19 | 123 | 215 | No hit | No description |
PROSITE profile | PS50863 | 14.706 | 124 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-15 | 125 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-16 | 127 | 207 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
CPQKVEKAIR AARMLQPKNP SFMVVLRSSS LMKNIVCVPI RFARRYLSRG LEFIKIQDSD 60 GRDWSVNLCW DSHRVNLGRG WNSVENYKED LEIITSEMFG CAKPSPESQR AIEAARMLKP 120 KNPSFMVLLR PYNCRNSILY VPSKFAKRYL SRGPKNIKLQ VSDGKEWAVC LLQQGYGRSL 180 LGKGWKIFCR ENTLEGGDVC LFELINNYVL KVFIFHAVEI SNPKIMAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-21 | 105 | 219 | 29 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-21 | 105 | 219 | 29 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020534852.1 | 1e-155 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A067LMY1 | 1e-154 | A0A067LMY1_JATCU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-22 | B3 family protein |
Publications ? help Back to Top | |||
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