PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11072.30
Common NameJCGZ_17282
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 219aa    MW: 24760.8 Da    PI: 9.5454
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11072.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.1e-161422111590
                    -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     + lp +f+++h  k  ++ +++lede+g + + k+   +k+++  l++GW++F+ +++L++gD vvF+l+++++f
  Jcr4S11072.30 142 SMGLPTQFCKDHLPK--KDLDMILEDENGSTCDAKY--LGKRNG--LSGGWRGFALDHKLDDGDAVVFELVESDRF 211
                    488*********544..5669***************..777777..9**********************9976655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.644128219IPR003340B3 DNA binding domain
CDDcd100173.11E-18132212No hitNo description
SuperFamilySSF1019361.67E-17133211IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-16137212IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.6E-11139213IPR003340B3 DNA binding domain
PfamPF023625.2E-14142211IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAIENGNSNT YEEARKQRVK ENKKRFEDLG ISNISKSLSK LSSPEKKSKQ RLPKPKSEGT  60
EAFELRRSSR ARNTVTSYLD DLDIDLPSLR KRSRSNSSWK SYVARPLEEV KLASYEDRAL  120
ALRAAEEFQS GLQSGNPSFV KSMGLPTQFC KDHLPKKDLD MILEDENGST CDAKYLGKRN  180
GLSGGWRGFA LDHKLDDGDA VVFELVESDR FKGFNILNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077831.11e-143putative B3 domain-containing protein At5g58280
RefseqXP_012077836.11e-143putative B3 domain-containing protein At5g58280
RefseqXP_020536872.11e-143putative B3 domain-containing protein At5g58280
RefseqXP_020536875.11e-143putative B3 domain-containing protein At5g58280
RefseqXP_020536878.11e-143putative B3 domain-containing protein At5g58280
SwissprotQ9FHB24e-52Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLA0A067LLN21e-148A0A067LLN2_JATCU; Uncharacterized protein
STRINGVIT_06s0004g08270.t015e-92(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-43B3 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]