PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S10588.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

SBP

Protein Properties

Length: 326aa MW: 36469.7 Da PI: 8.4829

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S10588.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.3	6.7e-41	153	230	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+++ Jcr4S10588.10 153 RCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSHQ 230 6**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.4E-35	147	215	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.376	151	228	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.93E-38	152	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.1E-31	154	227	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009554	Biological Process	megasporogenesis
GO:0009556	Biological Process	microsporogenesis
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MLEYEWGNPS TMILSGDEPT QDPDQNRQIF DHYTAQSFND NLVPQPTTTL FHQPTTHQVN 60 SLYDPRGYAG PSSYTPSHHS LLSLDPITNP AAAGPSYFLV PKTEEVSRPA DYTARIGLNL 120 GGRTYFSSAE DDFVNRLYRR SRPVEPGSTS APRCQAEGCN ADLTHAKHYH RRHKVCEFHS 180 KASTVIAAGL TQRFCQQCSR FHLLSEFDNG KRSCRKRLAD HNRRRRKSHQ INQETHKSSQ 240 QESGRNSSSE NPTSELASSS GKVAGSPPDS GVNNSSSVTV AVSPPRMFLD CFQAKTISGN 300 CIFFFCIIKL TVFLKWVVPL KMEELI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-31	146	227	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00090	SELEX	Transfer from AT1G02065	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012083646.1	0.0	squamosa promoter-binding-like protein 8
Swissprot	Q8GXL3	1e-82	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A067JXX7	0.0	A0A067JXX7_JATCU; Uncharacterized protein
STRING	cassava4.1_023056m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6801	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	2e-84	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]