PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 280aa MW: 30224.9 Da PI: 8.0094

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S10008.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0015	112	134	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Jcr4S10008.20 112 YECKTCNRCFPSFQALGGHRASH 134 99**********99999998887 PP
2	zf-C2H2	13.9	0.00016	186	208	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Jcr4S10008.20 186 HECSICGAEFSSGQALGGHMRRH 208 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.68E-9	111	134	No hit	No description
Pfam	PF13912	1.9E-11	111	136	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.743	112	139	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.14	112	134	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	114	134	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.68E-9	181	208	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.2E-4	184	208	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.7E-13	185	210	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.743	186	208	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	186	208	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	188	208	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MVIEAQELAM GSTEIITKGK RTKRQRAVSP LRLAVTSSSS SSGGAAPNEI IESNTSLSSS 60 TPATSIEFSG GRGGGEEEED MANCLILLAQ GTQKNLPKLP ASSYSSPKAC VYECKTCNRC 120 FPSFQALGGH RASHKKPNTS KNSNEEKKVF LEEDDDQVAL SLQIVPNRSL FASSNSNINV 180 KSNKVHECSI CGAEFSSGQA LGGHMRRHRA AFASNTNSNS MKMSMSLGTE LQEAKKPRNS 240 LQLDLNLPAP EDDIRESKFH FASKEQVLVF SSSSLVDCHY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012082467.1	0.0	zinc finger protein ZAT5
TrEMBL	A0A067KBJ7	0.0	A0A067KBJ7_JATCU; Uncharacterized protein
STRING	XP_006493540.1	2e-94	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-50	C2H2 family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]