PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S09951.10 | ||||||||
Common Name | JCGZ_19811 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 366aa MW: 40994.6 Da PI: 9.2987 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35 | 1.9e-11 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r+ + kRr g+lKK +EL +LC++ + ii+s++ Jcr4S09951.10 11 IVNDALRKANLKKRRIGLLKKVSELTTLCGVSAFAIIYSPDE 52 669999*********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.297 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.7E-17 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.24E-24 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 5.49E-20 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-11 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MTRKKVKLVW IVNDALRKAN LKKRRIGLLK KVSELTTLCG VSAFAIIYSP DETEPMFWPS 60 RLLVEQLLMR YQNMPKIERS KKMMNQESYL KERVVKVQAQ SRKNQRKNRD VEMSYLINKL 120 HKGNGADDFE FNELQVLIWL LGEKMKDLRK RVEYFQQFPP LPPTTSFSPP LPLPNEGPTM 180 QEPGHQLTDV ASANGVGDGD IRNSNPRDTM ICDQWYLDII NNNNDNLAGS SGAKNDMMNH 240 HPYAYNITYN GGDTGFPTGS TGNTFSLGLV SSNINMGGGG NHFQMRQQSI HANINSISGH 300 SFGLGLQPYQ GNIDNYNGGN GMGLRMPPPA IAIGASEPEM HGLFAGGSDT GTLYDIIKPW 360 YHNFSH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLVWIVNDALRKANLKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012084552.2 | 0.0 | uncharacterized protein LOC105643919 | ||||
TrEMBL | A0A067K5A7 | 0.0 | A0A067K5A7_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_021594m | 1e-110 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11014 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-31 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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