PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S09904.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 538aa MW: 60938.9 Da PI: 6.1774

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S09904.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126	3.2e-39	5	134	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgk..rknratksgyWkatgkdkevls 94 +G+rFhPtdeelv+++Lk+k++g ++ +++ i+ +d+y++ePw+Lp+ + ++++ wyfF+kr+ ky++ + r nr+t++g Wk tg+++ v++ Jcr4S09904.10 5 VGYRFHPTDEELVDYFLKHKMDGYDFLVDDDIRLIDLYRYEPWELPRlaAGVSNDQVWYFFCKRELKYKNASrpRFNRSTDTGHWKPTGSENIVKA 100 69*********************999999***********43333347789********876337799********999999 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyr 127 k +++++g+k+tLvfy ap+ kt+Wv+hey+ Jcr4S09904.10 101 KgSNKTIGTKRTLVFYIRGAPREIKTNWVIHEYQ 134 877778******99999**********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	45.343	3	153	IPR003441	NAC domain
SuperFamily	SSF101941	4.18E-43	4	153	IPR003441	NAC domain
Pfam	PF02365	2.6E-23	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MNGRVGYRFH PTDEELVDYF LKHKMDGYDF LVDDDIRLID LYRYEPWELP RLAAGVSNDQ 60 VWYFFCKREL KYKNASRPRF NRSTDTGHWK PTGSENIVKA KGSNKTIGTK RTLVFYIRGA 120 PREIKTNWVI HEYQPKSILP HQKDFVLCKL KEKGDGKADS SGSDQAESSR NNNRASDHHP 180 VELSTPQEVN LELLLQSFIT GNEKNFENPS AMQPQIRIEE QGISLDDIMF NDVFDNDSDV 240 LSLQFDNNEP QVDLNQMADS FIVVPDEQSG EEFLYPISAD SSNRQENAST HLNSSCSPQS 300 MIGVYLDDIN ETDAGIAYGN SIPFGASSLN NGQTNSKAYR QTQRVQTITE TLPPSTYIQS 360 GKEKNHFHRD EILVMEASCS SADSKTGSSE EINSIGVANK ESPIHTRTRT HQKTESGNIT 420 VKKELLGKMS ARPEHKVRIK LEVDREIEMH LFSDNEIKVL VSVCRQEKLE KNDNALNLCR 480 ESKSTKENIT AKTEKDQKYV NAKTNMKLRD NSVTGNKKTG TFIRMETSLL SQGSSPPS

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MNGRVGYRFH PTDEELVDYF LKHKMDGYDF LVDDDIRLID LYRYEPWELP RLAAGVSNDQ  60
VWYFFCKREL KYKNASRPRF NRSTDTGHWK PTGSENIVKA KGSNKTIGTK RTLVFYIRGA  120
PREIKTNWVI HEYQPKSILP HQKDFVLCKL KEKGDGKADS SGSDQAESSR NNNRASDHHP  180
VELSTPQEVN LELLLQSFIT GNEKNFENPS AMQPQIRIEE QGISLDDIMF NDVFDNDSDV  240
LSLQFDNNEP QVDLNQMADS FIVVPDEQSG EEFLYPISAD SSNRQENAST HLNSSCSPQS  300
MIGVYLDDIN ETDAGIAYGN SIPFGASSLN NGQTNSKAYR QTQRVQTITE TLPPSTYIQS  360
GKEKNHFHRD EILVMEASCS SADSKTGSSE EINSIGVANK ESPIHTRTRT HQKTESGNIT  420
VKKELLGKMS ARPEHKVRIK LEVDREIEMH LFSDNEIKVL VSVCRQEKLE KNDNALNLCR  480
ESKSTKENIT AKTEKDQKYV NAKTNMKLRD NSVTGNKKTG TFIRMETSLL SQGSSPPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-33	6	153	20	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-33	6	153	20	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-33	6	153	20	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-33	6	153	20	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-33	6	153	23	168	NAC domain-containing protein 19
3swm_B	1e-33	6	153	23	168	NAC domain-containing protein 19
3swm_C	1e-33	6	153	23	168	NAC domain-containing protein 19
3swm_D	1e-33	6	153	23	168	NAC domain-containing protein 19
3swp_A	1e-33	6	153	23	168	NAC domain-containing protein 19
3swp_B	1e-33	6	153	23	168	NAC domain-containing protein 19
3swp_C	1e-33	6	153	23	168	NAC domain-containing protein 19
3swp_D	1e-33	6	153	23	168	NAC domain-containing protein 19
4dul_A	1e-33	6	153	20	165	NAC domain-containing protein 19
4dul_B	1e-33	6	153	20	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775349	0.0	KC775349.1 Jatropha curcas NAC transcription factor 071 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012083079.1	0.0	NAC domain-containing protein 89 isoform X1
TrEMBL	R4N5S4	0.0	R4N5S4_JATCU; NAC transcription factor 071
STRING	XP_002515104.1	1e-179	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14584	7	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.2	6e-41	NAC transcription factor-like 9