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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S09759.30 | ||||||||
Common Name | JCGZ_10880, LOC105636189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C2H2 | ||||||||
Protein Properties | Length: 205aa MW: 23189.2 Da PI: 7.3642 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.2e-05 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F+++ L H++ H Jcr4S09759.30 74 FVCKYCHKKFNNSQALGGHQNAH 96 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.4E-5 | 70 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.74E-7 | 70 | 102 | No hit | No description |
PROSITE profile | PS50157 | 11.635 | 74 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MKRNVEEEEE PIEEFNGQKA DPLLDLRLSS TNDVEVDSKL ELNLLGVLGN KESPKIPESE 60 TERNNNKEGG KRNFVCKYCH KKFNNSQALG GHQNAHKRER ALQKKEKGLD LLVPYGLVID 120 AHPSLYPYPS GHHGAFGRPL GIKMHSMIHK PPPYHYYDSY WANMEMNRSP PFLGRLIEGS 180 SLAAANRIGS QPYDLPGHYD LSLNL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012074778.1 | 1e-150 | zinc finger protein 3 | ||||
TrEMBL | A0A067KV37 | 1e-149 | A0A067KV37_JATCU; Uncharacterized protein | ||||
STRING | XP_002523665.1 | 7e-41 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1822 | 30 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 2e-20 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105636189 |
Publications ? help Back to Top | |||
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