PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S09529.20
Common NameJCGZ_08577
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 318aa    MW: 36098.3 Da    PI: 4.9832
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S09529.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.21.3e-5661331128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeelv +yL +k++gk++el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rdkky++g+r+nratk+gyWkatgkd++v+s
  Jcr4S09529.20   6 LPPGFRFHPTDEELVAYYLDRKITGKTIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDMEWYFYSPRDKKYPNGSRTNRATKAGYWKATGKDRAVHS 100
                    79****************************.99**************95345556888************************************** PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++ vg+kktLv+y+grap+g +t+Wvmheyrl
  Jcr4S09529.20 101 -QNRPVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                    .999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-643160IPR003441NAC domain
PROSITE profilePS5100560.2696160IPR003441NAC domain
PfamPF023657.1E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAAMSLPPGF RFHPTDEELV AYYLDRKITG KTIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DMEWYFYSPR DKKYPNGSRT NRATKAGYWK ATGKDRAVHS QNRPVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLTHHSFCA PASISSSFKD SYALCRVFKK TMQIPKSKQG KNDAENEDDN  180
YCNDENLNIN DYSKFPISDT SSSDVTQGTP METALADDSQ APFTSDEANS SANMYSMGLD  240
FASNLLQDME IPSLHSYQIA YPPLEIDDFP QINIAETMPA AKSEIHITED YCINATLDDI  300
FSLCSSHDNS VAQDSVIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-58216611174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753240.0KC775324.1 Jatropha curcas NAC transcription factor 046 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020535546.10.0NAC domain-containing protein 86
SwissprotQ9FFI54e-86NAC86_ARATH; NAC domain-containing protein 86
TrEMBLR4N5P80.0R4N5P8_JATCU; NAC transcription factor 046
STRINGcassava4.1_024467m1e-168(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-109NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]