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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S09518.30 | ||||||||
Common Name | JCGZ_01471 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | B3 | ||||||||
Protein Properties | Length: 271aa MW: 31096.5 Da PI: 9.2787 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.1 | 7.1e-23 | 145 | 239 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f ++ ps+v ++ ++++ +fa+++ +k ++ +++led +gr+W+ ++ +++++ + +GW++F ++n+L++gD++vF+l++ +++l+v++ Jcr4S09518.30 145 FMVAMQPSYVRGRSKITISATFARKYFEKMQG--KVILEDGNGRVWSARH--VRRGKKASIDNGWRKFSEDNELEVGDVCVFELVNAAKTKLKVTI 236 677899********************755433..8***************..77777788*************************999999***** PP E-S CS B3 97 frk 99 fr+ Jcr4S09518.30 237 FRH 239 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.122 | 1 | 47 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.42E-9 | 2 | 54 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-10 | 5 | 57 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-27 | 137 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-25 | 138 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.13E-23 | 143 | 238 | No hit | No description |
PROSITE profile | PS50863 | 15.453 | 145 | 240 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-20 | 145 | 240 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-20 | 145 | 240 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MKCDGEICLQ KGWQEFVEYY SIACGHLLVF EYEKTCHSFY VLIFDKSASE IDYPFSFTNG 60 DNELKDPEIG KTEEESPLPF LHISKKVKLE NSEEQSEEKK CHESKSSENQ KENVVPPKIQ 120 SLTAKGKASA LRRAKTKFKS RNPFFMVAMQ PSYVRGRSKI TISATFARKY FEKMQGKVIL 180 EDGNGRVWSA RHVRRGKKAS IDNGWRKFSE DNELEVGDVC VFELVNAAKT KLKVTIFRHN 240 KDTDRKTPVG DVGYVTKGMN VCKFEPITYK N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 9e-17 | 120 | 241 | 25 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 9e-17 | 120 | 241 | 25 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020540838.1 | 0.0 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A067L932 | 0.0 | A0A067L932_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_028222m | 2e-69 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 8e-18 | related to vernalization1 1 |
Publications ? help Back to Top | |||
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