PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Protein Properties

Length: 271aa MW: 31096.5 Da PI: 9.2787

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S09518.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.1	7.1e-23	145	239	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f ++ ps+v ++ ++++ +fa+++ +k ++ +++led +gr+W+ ++ +++++ + +GW++F ++n+L++gD++vF+l++ +++l+v++ Jcr4S09518.30 145 FMVAMQPSYVRGRSKITISATFARKYFEKMQG--KVILEDGNGRVWSARH--VRRGKKASIDNGWRKFSEDNELEVGDVCVFELVNAAKTKLKVTI 236 677899******************755433..8***********..77777788*********************999999*** PP E-S CS B3 97 frk 99 fr+ Jcr4S09518.30 237 FRH 239 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.122	1	47	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	9.42E-9	2	54	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.3E-10	5	57	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.1E-27	137	240	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-25	138	240	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.13E-23	143	238	No hit	No description
PROSITE profile	PS50863	15.453	145	240	IPR003340	B3 DNA binding domain
SMART	SM01019	2.8E-20	145	240	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-20	145	240	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MKCDGEICLQ KGWQEFVEYY SIACGHLLVF EYEKTCHSFY VLIFDKSASE IDYPFSFTNG 60 DNELKDPEIG KTEEESPLPF LHISKKVKLE NSEEQSEEKK CHESKSSENQ KENVVPPKIQ 120 SLTAKGKASA LRRAKTKFKS RNPFFMVAMQ PSYVRGRSKI TISATFARKY FEKMQGKVIL 180 EDGNGRVWSA RHVRRGKKAS IDNGWRKFSE DNELEVGDVC VFELVNAAKT KLKVTIFRHN 240 KDTDRKTPVG DVGYVTKGMN VCKFEPITYK N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	9e-17	120	241	25	144	B3 domain-containing transcription factor VRN1
4i1k_B	9e-17	120	241	25	144	B3 domain-containing transcription factor VRN1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020540838.1	0.0	B3 domain-containing transcription factor VRN1-like
TrEMBL	A0A067L932	0.0	A0A067L932_JATCU; Uncharacterized protein
STRING	cassava4.1_028222m	2e-69	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF98	34	369

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	8e-18	related to vernalization1 1

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]