PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S09518.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 621aa    MW: 71199.2 Da    PI: 8.1482
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S09518.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.3e-19261354197
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f  +l ps+v++  r+++  +fa+++  k+ +  +++l+d +gr+W+ k+   +k g+ +++ GW+eF ++n+L++gD++vF+l++r e +++v +
  Jcr4S09518.10 261 FMVELRPSYVHNGTRVSIKASFARKYL-KT-GRGDVILNDVNGRVWSAKYAKHGKLGSKIFE-GWREFSQDNELEVGDVCVFELINRFEITFKVVI 353
                    677899********************4.33.4449***************877888888787.*********************987555566655 PP

                    E CS
             B3  97 f 97 
                    +
  Jcr4S09518.10 354 L 354
                    5 PP
2B334.83e-11384468287
                    EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                    fk+ +++ +l ++++++p +f++e+ + k ++   ltle  ++++W vk+i  ++  ++  l++GW  F+k+n L+eg +++F+l++ 
  Jcr4S09518.10 384 FKTIIRPGHLDQRCVYVPVEFMAECrQRKFTG--NLTLEV-ENKRWLVKVINyDQPHCQGKLSAGWWLFAKENYLQEGNVCIFELIDG 468
                    57778888888888***********5433334..566555.5699*****555666666789**********************9863 PP
3B351.61.7e-164765521899
                    --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
             B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                    +pkkfa ++g k   +  + l+ ++g +W+v+l   k++g++++++GW+eFv+   L  g f+vF++d++   f  +v +f+k
  Jcr4S09518.10 476 IPKKFAIKYGDK--LPSSIFLKVPTGAKWRVEL--IKCDGEVWFKNGWQEFVEYYSLAHGSFLVFQYDKKnCHF--NVIIFDK 552
                    9********988..5667***************..********************************9865666..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.4333119IPR003340B3 DNA binding domain
PROSITE profilePS508639.31957119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-1163119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-1164126IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-22253355IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-21256358IPR015300DNA-binding pseudobarrel domain
CDDcd100177.33E-22259355No hitNo description
PROSITE profilePS5086314.48261357IPR003340B3 DNA binding domain
PfamPF023621.4E-17261355IPR003340B3 DNA binding domain
SMARTSM010195.3E-15261357IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-13377471IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-12379471IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-10382473No hitNo description
PROSITE profilePS508637.866383469IPR003340B3 DNA binding domain
PfamPF023623.0E-9384468IPR003340B3 DNA binding domain
SMARTSM010193.8E-5384471IPR003340B3 DNA binding domain
SMARTSM010191.2E-8472553IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-19475553IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.506476553IPR003340B3 DNA binding domain
PfamPF023625.1E-14476552IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-19476553IPR015300DNA-binding pseudobarrel domain
CDDcd100175.21E-17476551No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MGCGSIWLMI IGFGTGLRRA LLEGTRPVAS GAIVNTCLPD CHEINENVVL NAQEGSVVNG  60
ELVPSGATWQ IEMVNCDGTI CLQKGWQEFV EYYSIAYGYF LVFEYEKTCH FNIFICDKSA  120
LEIDYPFSVT DGDHDKENNL EKELQKSKVA KSKDDAFTDN KENSIEKELK EPKVEKSKTD  180
DSVEVLDVEE SPNPFYRPSK KMKLENSALQ FEAKKCTRRM SGEKQKANEV SARTEPLAMN  240
RKVNNALQRA KAEFKSTKPY FMVELRPSYV HNGTRVSIKA SFARKYLKTG RGDVILNDVN  300
GRVWSAKYAK HGKLGSKIFE GWREFSQDNE LEVGDVCVFE LINRFEITFK VVILREVKDD  360
NKNSILGKSK VRHEKEIISK NPSFKTIIRP GHLDQRCVYV PVEFMAECRQ RKFTGNLTLE  420
VENKRWLVKV INYDQPHCQG KLSAGWWLFA KENYLQEGNV CIFELIDGET MLIKGIPKKF  480
AIKYGDKLPS SIFLKVPTGA KWRVELIKCD GEVWFKNGWQ EFVEYYSLAH GSFLVFQYDK  540
KNCHFNVIIF DKSASEIDYP YNNLEKEFQE PKSAEETQTD VSAEIFDGFS TSRKARQKSP  600
LPFSQPHKKM KVDNSTRNDK G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1225035538141B3 domain-containing transcription factor VRN1
4i1k_B2e-1225035538141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020540001.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A067L9800.0A0A067L980_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-29B3 family protein