PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S09485.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 382aa    MW: 43741.5 Da    PI: 9.6662
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S09485.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.5e-1825112799
                    .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
             B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                     +d+ + + lv+p+kf++++g++   +  ++l+ +s  +W+v+l   k++g+++l++GW+eFv+   L +g  +vF++d+r  +f  +v +f+k
  Jcr4S09485.10  25 LADTIRDKKLVFPRKFVRKYGNN--LPSSIVLTVPSCAKWQVEL--IKSDGEIWLQNGWQEFVEYYALTVGSLLVFEYDERnCRF--NVIIFDK 112
                    468888999***********988..6667***************..*********************************885777..9999987 PP
2B359.74.9e-19237333198
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                    f  v+ ps+v++ + +++p +fa+++ ++k++  +++l    gr+W++ +   +k++    l +GW +F ++n+L++gD++vF+l++   ++l+v 
  Jcr4S09485.10 237 FMVVMQPSYVHAGNKMWIPERFARRYLKIKRG--DVILIVMGGRTWSIIYHCnNKTKLNPRLCGGWTKFSHDNHLEVGDVCVFELVNPAITKLKVV 330
                    77899*********************777666..69999999******995524444449999**********************98899999999 PP

                    EE- CS
             B3  96 vfr 98 
                    +fr
  Jcr4S09485.10 331 IFR 333
                    997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-2314113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2214113IPR015300DNA-binding pseudobarrel domain
CDDcd100175.41E-2018111No hitNo description
PROSITE profilePS5086313.56319113IPR003340B3 DNA binding domain
SMARTSM010191.4E-1620113IPR003340B3 DNA binding domain
PfamPF023621.0E-1525112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-25229334IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-25230335IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-25235333No hitNo description
PfamPF023624.4E-17237333IPR003340B3 DNA binding domain
PROSITE profilePS5086313.972237335IPR003340B3 DNA binding domain
SMARTSM010192.7E-13237335IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MASSSYPKKD DLFEANKPHF LKIVLADTIR DKKLVFPRKF VRKYGNNLPS SIVLTVPSCA  60
KWQVELIKSD GEIWLQNGWQ EFVEYYALTV GSLLVFEYDE RNCRFNVIIF DKSALEINYP  120
YTVNVENEGK GTNNPEEAKY DVSYESLDEV LPSRKIMEES PSPLPNPHKN MKLENLTLPE  180
TCKKMKLENP TRKNEAKRGS CGEKQKFIWR TQPLTKNYKA NALHRARTAF KSKNPFFMVV  240
MQPSYVHAGN KMWIPERFAR RYLKIKRGDV ILIVMGGRTW SIIYHCNNKT KLNPRLCGGW  300
TKFSHDNHLE VGDVCVFELV NPAITKLKVV IFRYSKDASG SHHSIHAPPP PLPPSDSLPS  360
EAAISIYSVA DHICTHSPPK VI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1521033323141B3 domain-containing transcription factor VRN1
4i1k_B1e-1521033323141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081544.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A067K1330.0A0A067K133_JATCU; Uncharacterized protein
STRINGcassava4.1_025209m4e-98(Manihot esculenta)
STRINGcassava4.1_028222m1e-96(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-46B3 family protein