PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S09200.10 | ||||||||
Common Name | JCGZ_25393, LOC105647152 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 28002.3 Da PI: 5.2391 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80 | 5.3e-25 | 9 | 133 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +G+rF Pt+eelv++yL++k++++ ++++ ik++ d+y+ ePw++ ++++ + yf++ ++ k+++ +r++r+t sg+W +k++ + Jcr4S09200.10 9 SVGYRFCPTEEELVCFYLQEKLHKTLPVIADAvIKTLdDLYSDEPWNIF--CNETPANGYFYVFTKLKTRSANRSKRTTPSGTWTGRS-SKDIPC- 100 68********************99986665655999999*********6..34445678999999999999*************8654.477877. PP NAM 96 kgelvglkktLvfy.kgrapkgektdWvmheyrl 128 ++ + ++k +vf kg+a ++++ +W+mhe++l Jcr4S09200.10 101 -RNITYVRKYFVFEaKGEAGSSSNGHWTMHEFSL 133 .67899*******9788999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-26 | 6 | 150 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.301 | 8 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-17 | 10 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAENPFMLSV GYRFCPTEEE LVCFYLQEKL HKTLPVIADA VIKTLDDLYS DEPWNIFCNE 60 TPANGYFYVF TKLKTRSANR SKRTTPSGTW TGRSSKDIPC RNITYVRKYF VFEAKGEAGS 120 SSNGHWTMHE FSLKDEGFKG DYVLCKIKRE DKSEQGTVAT VPFLDGKKRK SSVDKEEEND 180 NSKKMRQDNL SPVNSNSSWH LSNEGLVDYN SSFSNKIAEI EAPINETDIG FYDNLLDELL 240 ERWC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC775365 | 0.0 | KC775365.1 Jatropha curcas NAC transcription factor 087 gene, complete cds. | |||
GenBank | KC775366 | 0.0 | KC775366.1 Jatropha curcas NAC transcription factor 088 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012088537.1 | 1e-180 | NAC domain-containing protein 30 | ||||
TrEMBL | R4N7T5 | 1e-179 | R4N7T5_JATCU; NAC transcription factor 087 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16532 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71930.1 | 2e-16 | vascular related NAC-domain protein 7 |
Link Out ? help Back to Top | |
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Entrez Gene | 105647152 |
Publications ? help Back to Top | |||
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