PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S09185.10 | ||||||||
Common Name | JCGZ_26377, LOC105648728 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | B3 | ||||||||
Protein Properties | Length: 282aa MW: 31273.2 Da PI: 7.3773 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.5 | 1.5e-24 | 156 | 257 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++ Jcr4S09185.10 156 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENG 248 99*****************************7333.34459************************************************..44999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 el+v+v+r+ Jcr4S09185.10 249 ELRVGVRRA 257 9*****996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.55E-41 | 152 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-42 | 152 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.08E-23 | 154 | 256 | No hit | No description |
Pfam | PF02362 | 1.7E-22 | 156 | 257 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-23 | 156 | 258 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.012 | 156 | 258 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MDSSEISIKG NSGNVRGESF SPGYSEPNAV EGQKGHCRRQ ASARDAETAL YTELWHACAG 60 PLVTVPREGE RVFYFPQGHI EQVEASTNQV ADRQMPVYDL PSKILCSVIN VLLKAEPDTD 120 EVYAQVTLVP EAKQDENAVE KESPKPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE 180 CLPPLDMSRQ PPTQELVAKD LHGNEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF 240 IFLRGENGEL RVGVRRAMRQ QGNVPSSVIS SHSMHLGVLA TA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-130 | 49 | 282 | 18 | 250 | Auxin response factor 1 |
4ldw_A | 1e-130 | 49 | 282 | 18 | 250 | Auxin response factor 1 |
4ldw_B | 1e-130 | 49 | 282 | 18 | 250 | Auxin response factor 1 |
4ldx_A | 1e-130 | 49 | 282 | 18 | 250 | Auxin response factor 1 |
4ldx_B | 1e-130 | 49 | 282 | 18 | 250 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF022004 | 0.0 | KF022004.1 Jatropha curcas auxin response factor (ARF) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012090599.1 | 0.0 | auxin response factor 2 | ||||
Swissprot | Q94JM3 | 1e-167 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A067JF52 | 0.0 | A0A067JF52_JATCU; Auxin response factor | ||||
STRING | cassava4.1_001542m | 1e-177 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 1e-169 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 105648728 |