PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S08640.20 | ||||||||
Common Name | JCGZ_12708, LOC105637310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 27620.9 Da PI: 8.0485 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.6 | 9.2e-48 | 4 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF Pt+eelv++yL++k+e+++ el++vi+ +diy++ePw+Lpk ++++++++w+fF++r++++a+g r++r+t+sgyWkatg+ v Jcr4S08640.20 4 LPPGFRFYPTEEELVSFYLHNKLEERRQELNRVIPVTDIYNIEPWNLPKlageRCQGDTEQWFFFAPRQEREARGGRPRRTTASGYWKATGSPGYV 99 79****************************999***************657776677888************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+ Jcr4S08640.20 100 YSSDSKVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 135 **********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.23E-49 | 3 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.114 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-24 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGDLPPGFRF YPTEEELVSF YLHNKLEERR QELNRVIPVT DIYNIEPWNL PKLAGERCQG 60 DTEQWFFFAP RQEREARGGR PRRTTASGYW KATGSPGYVY SSDSKVIGVK KTMVFYKGKA 120 PTGRKTKWKM NEYRAIEGAA DPSNTTVPKL RHEFSLCRVY ITSGSFRAFD RRPLEAVARE 180 TQLLGYAATT SAQDHRMVDN SSSPDTSCSG GDHADLPGTA GSANVDMVDG LPQPLWDWEQ 240 LNWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-35 | 4 | 165 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-35 | 4 | 165 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-35 | 4 | 165 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-35 | 4 | 165 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-35 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-35 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-35 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-35 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-35 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-35 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-35 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-35 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
4dul_A | 1e-35 | 4 | 165 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-35 | 4 | 165 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC775315 | 1e-162 | KC775315.1 Jatropha curcas NAC transcription factor 037 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012076136.2 | 0.0 | NAC domain-containing protein 90 isoform X2 | ||||
Swissprot | Q9FMR3 | 1e-103 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | R4N7M3 | 0.0 | R4N7M3_JATCU; NAC transcription factor 037 | ||||
STRING | cassava4.1_022893m | 1e-139 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-105 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Entrez Gene | 105637310 |
Publications ? help Back to Top | |||
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