PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S08587.40 | ||||||||
Common Name | JCGZ_01868, LOC105630009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C3H | ||||||||
Protein Properties | Length: 119aa MW: 13024.8 Da PI: 10.1209 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.4 | 1.8e-11 | 43 | 65 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t+lC+f+a+ G C +G++CkF H+ Jcr4S08587.40 43 TKLCKFWAK-GRCAFGSNCKFLHS 65 89*******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.5E-6 | 40 | 66 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.967 | 40 | 67 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-9 | 43 | 65 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-9 | 43 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF50978 | 1.67E-12 | 48 | 117 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 1.6E-6 | 72 | 111 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 1.1E-6 | 75 | 116 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Pfam | PF00400 | 1.7E-6 | 77 | 111 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 13.475 | 79 | 119 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 14.719 | 79 | 119 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 98 | 112 | IPR019775 | WD40 repeat, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MDILVRTIDN PKPSFYDSSV GAKKPNNFYD SSVGAKKPNS QATKLCKFWA KGRCAFGSNC 60 KFLHSWYLSG NGFSMLARLQ GHKKAVVGIA LPSGSDQLYT GSRDGTVRVW DCKSGNCNH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067070.1 | 2e-82 | zinc finger CCCH domain-containing protein 48 | ||||
Refseq | XP_020533369.1 | 2e-82 | zinc finger CCCH domain-containing protein 48 | ||||
Swissprot | Q9FNZ2 | 5e-27 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A067LC60 | 4e-81 | A0A067LC60_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_021841m | 1e-29 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14636 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 2e-29 | zinc finger WD40 repeat protein 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 105630009 |
Publications ? help Back to Top | |||
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