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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S08408.10 | ||||||||
Common Name | JCGZ_12433, JHL03K20.6, LOC105639746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 21290.3 Da PI: 9.6736 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.4e-17 | 30 | 78 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Jcr4S08408.10 30 YKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 78 9*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.8E-36 | 29 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 29 | 87 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.036 | 29 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 29 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-11 | 30 | 41 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.62E-25 | 30 | 87 | No hit | No description |
Pfam | PF00847 | 1.0E-10 | 30 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-11 | 68 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MENGVEKAMA ARKRGGGGGG GGGVEGERTY KGIRMRKWGK WVAEIREPNK RSRIWLGSYS 60 TPVAAARAYD TAVFYLRGPS ARLNFPEYLA GENIGGSCGD MSAASIRKKA TEVGARVDAA 120 LNHHHNHHHS HHHHSHHHEH HRSSSSSSNS TNNNSSSNHK SVVDSSEFKS FVERVDLNKM 180 PDPEDSDADW ERN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 20 | 94 | 4 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00595 | DAP | Transfer from AT5G67190 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP011968 | 0.0 | AP011968.1 Jatropha curcas DNA, clone: JHL03K20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079279.1 | 1e-140 | ethylene-responsive transcription factor ERF010 | ||||
Swissprot | Q9FH94 | 6e-59 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | E6NU87 | 1e-139 | E6NU87_JATCU; JHL03K20.6 protein | ||||
STRING | cassava4.1_016924m | 5e-89 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 8e-54 | DREB and EAR motif protein 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 105639746 |
Publications ? help Back to Top | |||
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