PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S08055.50
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 269aa    MW: 30084.8 Da    PI: 5.431
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S08055.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.7e-141495146
                     TSSS-HHHHHHHHHHHHHTTTT.....................................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.....................................tWktIartmgkgRtlkqcksrwqk 46
                     rg+W++eEd  l+++ +++G+                                       W+  a+ ++ gRt++++k++w++
    Jcr4S08055.50 14 RGPWSPEEDATLINYLQKHGTSgnwislprkadqissmevllkkkiksfcrsitawevgKWSFMASQLP-GRTDNDVKNYWNT 95
                     89******************99***********************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-21535IPR009057Homeodomain-like
PROSITE profilePS5129411.7529101IPR017930Myb domain
SMARTSM007172.2E-131399IPR001005SANT/Myb domain
PfamPF002496.2E-61440IPR001005SANT/Myb domain
SuperFamilySSF466891.07E-111498IPR009057Homeodomain-like
CDDcd001675.37E-81697No hitNo description
Gene3DG3DSA:1.10.10.604.5E-2173101IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLINYLQ KHGTSGNWIS LPRKADQISS MEVLLKKKIK  60
SFCRSITAWE VGKWSFMASQ LPGRTDNDVK NYWNTRLKKK LLAVAGKNTN INSSRGSKKS  120
NNTNNIMEKS LISIPEADQS TYTINPENSS SLLPPLTDMG FEQNYYCDIP QELNLEQKNQ  180
LIPLSSTFME LPNFSPYGCD NNYITTSTVS SLSSPSSRET LMNNNLRSAA VGDGSSLLLD  240
EDGIFLPDIE LLDQSSYYYE QVNVFGNFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077522.11e-160transcription factor MYB36
TrEMBLA0A067KFL71e-136A0A067KFL7_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.14e-34MYB family protein