PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S07615.20
Common NameJCGZ_09318, LOC105636978
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 290aa    MW: 31992.2 Da    PI: 7.305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S07615.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-11121167354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h++ Er+ R++i++++  L+el+P +      K +Ka++L  A+ YIk L
  Jcr4S07615.20 121 EMHKMYERKHRHQIKEKMKALQELVPYN-----LKGDKASVLDDAIAYIKAL 167
                    58*************************5.....49***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-14117174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.135118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-11121172No hitNo description
SuperFamilySSF474599.03E-14121175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8122167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-10124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MPLWEIVEPY FRHNGGHVSM VTNDPSIIKP SSSFPTSISS NMIMYEKDYL QDPFAGFPDI  60
PCCPYLHTTG HEEKYGFKPC DEQPCSGSKI KATEMDIPSE FSGEANKKKH DKKPKSARSA  120
EMHKMYERKH RHQIKEKMKA LQELVPYNLK GDKASVLDDA IAYIKALKMQ NEALGFSMMG  180
EGGTWQATAM SQTGSNGSVT PSGQYVSVSA GVSVPPPLHS SSADNIQFSP TVEEGQVFPV  240
PQLPFITFPT STSAAVPSFN NSFCPFSLPD QQHFGFSNSR KLRAPISQNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111128KKPKSARSAEMHKMYERK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067KRW30.0A0A067KRW3_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.13e-18bHLH family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]